PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10026053
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 230aa    MW: 24045.6 Da    PI: 8.2314
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10026053genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-1883132356
          AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  y+GVr ++ +gr+ AeIrd +   g r r++lg+f+taeeAa a++ a++kl+g+
  Lus10026053  83 YRGVRKRP-WGRFSAEIRDrV---G-RCRHWLGTFDTAEEAALAYDSAALKLRGA 132
                  9*******.**********55...2.59*************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.2E-2882138IPR001471AP2/ERF domain
PROSITE profilePS5103221.33882139IPR001471AP2/ERF domain
PfamPF008474.3E-1382131IPR001471AP2/ERF domain
CDDcd000181.52E-2782138No hitNo description
SuperFamilySSF541712.55E-2082139IPR016177DNA-binding domain
SMARTSM003801.7E-3182145IPR001471AP2/ERF domain
PRINTSPR003671.0E-98394IPR001471AP2/ERF domain
PRINTSPR003671.0E-9105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MSTSFFPQAQ GTDHLFQEAV ETGPVLEGIA AVVGEEILYG TTTSNKMGTA SRRATSCTRA  60
DEQQQGGDHH HHHQATTGGA RNYRGVRKRP WGRFSAEIRD RVGRCRHWLG TFDTAEEAAL  120
AYDSAALKLR GAKAKTNFLV VPSTSLLPSS SSQVLQPQPP SKKKRNGCDC GGGDSDNKWA  180
VETSPAARLF SGGDGCVLGG GTGNNTSSGS GGAVGLELEL GFGVGFVGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1881138462ATERF1
3gcc_A1e-1881138462ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10026053
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100260531e-168(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130232631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.13e-20ERF family protein