PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10026067
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 261aa    MW: 29268.8 Da    PI: 9.6317
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10026067genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.19.9e-1119120197
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.........EEETTE.......EEE-TTHHHHHHHHT--TT-EEEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.......rkksgr.......yvltkGWkeFvkangLkegDfvvFkl 84 
                  ffkv +++   + +rl +p  f+++hg     s  ++l+ + g +W++ l +       r    +        +  + W +F++   Lk g ++vF++
  Lus10026067  19 FFKVILQETI-TDKRLAIPEMFVKKHGAA--LSSPVSLKLPGGTTWKIDLLIeicssssR----TsanknifWLCNETWHKFAQHYSLKHGHSLVFQY 109
                  6666655544.5567***********855..6667***************7767544331....1334455445569********************* PP

                  -SSSEE..EEEEE CS
           B3  85 dgrsefelvvkvf 97 
                  +g s f  ++ +f
  Lus10026067 110 EGGSLF--TIAIF 120
                  997777..66666 PP
2B338.91.6e-12150240188
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                  ffkv ++  +l+++++++p++f +++++ k+++++++++    + W+v+ +  k +++   + + +G   F+kan +++gD++ F+l +  +
  Lus10026067 150 FFKVVISQLHLAKNNMWVPREFSKRYMMMKTSKVEVKVQV-GEEWWKVNACRYKAGNGiynVQMNGGFACFAKANSIEVGDVCFFELLSAkE 240
                  889999999999999***********88888877777554.557899999665555556777788*********************765423 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.9E-1612121IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.0E-1713121IPR015300DNA-binding pseudobarrel domain
CDDcd100171.58E-1217121No hitNo description
PROSITE profilePS5086311.05318123IPR003340B3 DNA binding domain
PfamPF023625.1E-819120IPR003340B3 DNA binding domain
SMARTSM010192.5E-419123IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.2E-15145254IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-15146254IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-10150240IPR003340B3 DNA binding domain
PROSITE profilePS508639.953150255IPR003340B3 DNA binding domain
SMARTSM010190.0029150255IPR003340B3 DNA binding domain
CDDcd100171.71E-9150253No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MKSKTTDCGD VFDSGKPHFF KVILQETITD KRLAIPEMFV KKHGAALSSP VSLKLPGGTT  60
WKIDLLIEIC SSSSRTSANK NIFWLCNETW HKFAQHYSLK HGHSLVFQYE GGSLFTIAIF  120
DVLKGPEIQY PESITSSSSS TNEFVSKYPF FKVVISQLHL AKNNMWVPRE FSKRYMMMKT  180
SKVEVKVQVG EEWWKVNACR YKAGNGIYNV QMNGGFACFA KANSIEVGDV CFFELLSAKE  240
GGDGLSFKVT IVRQGGKERK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10026067
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100260670.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-17B3 family protein