PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10026212

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

Protein Properties

Length: 199aa MW: 23382.6 Da PI: 9.6671

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10026212	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	96.5	1.8e-30	36	129	1	86
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+ltpsdv+k++rlv+pkkfa ++ +++k ++++l+++d+ +sW+++++y+++s+++v+t+GW++Fvk+++Lke+D+++F++ + Lus10026212 36 FQKELTPSDVGKLNRLVIPKKFALKYfsnnytlnEYDKDNDVELVFYDKGMKSWRFRYCYWRSSQSFVFTRGWNRFVKDKKLKEKDIITFYRCN 129 99******************************99999**************************************************543 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.0E-34	32	148	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.96E-28	33	138	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.47E-26	34	140	No hit	No description
PROSITE profile	PS50863	13.803	36	145	IPR003340	B3 DNA binding domain
SMART	SM01019	1.3E-24	36	140	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.1E-27	36	130	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MAEDASSSSM RIIVSHHRGD QNVSNETPKW CRTHLFQKEL TPSDVGKLNR LVIPKKFALK 60 YFSNNYTLNE YDKDNDVELV FYDKGMKSWR FRYCYWRSSQ SFVFTRGWNR FVKDKKLKEK 120 DIITFYRCNV AEHHQFFFID ITRHRSSYEA NANGSSTEMD LIGFNLRPLM THKEETLLAT 180 NNIDVQGKGV RLFGVQLL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	5e-31	32	144	4	113	B3 domain-containing transcription factor NGA1
5os9_B	5e-31	32	144	4	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10026212

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021621544.1	5e-48	AP2/ERF and B3 domain-containing transcription factor At1g50680-like
Swissprot	Q9C688	4e-43	RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBL	A0A2C9VHU4	1e-46	A0A2C9VHU4_MANES; Uncharacterized protein
STRING	Lus10026212	1e-148	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5000	31	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51120.1	2e-45	RAV family protein

Link Out ? help Back to Top
Phytozome	Lus10026212