PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10026264
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 435aa    MW: 49479.5 Da    PI: 8.2308
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10026264genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.84.7e-1418871390
                 TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
           B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90
                 ++rl++p  f ++ +g      + +l+++sg+s+ v+      sgr + ++GWkeFv ++ L +gDf+vF++d++ + f
  Lus10026264 18 EHRLSIPVAFSKHLNGA----EDAVLRSSSGKSYPVNT-----SGREFKGEGWKEFVADQSLHVGDFLVFRYDNTqKVF 87
                 578*******9555555....379**************.....44446799********************98754443 PP
2B353.73.7e-17153253196
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE......EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr......yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  ff v++++++lk++rl +pk+fa+++++++ +++  +l +e+grsW v +   kk +       + l++G  +F ++n+L+ gD++ ++l++  ++++
  Lus10026264 153 FFVVTMRKYNLKKNRLLIPKEFARDNDLESMSHRSAILLNEEGRSWPVDMHSYKKHCFgkyfhqVALRRGIDRFQEENNLELGDTFNLELVQ-GGENP 249
                  889999********************99999999***************9543333334666668899*********************998.67777 PP

                  EEEE CS
           B3  93 vvkv 96 
                  v+k+
  Lus10026264 250 VFKM 253
                  8775 PP
3B355.79.3e-18297386394
                  EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                   v ++  +l++ +l++p +f+e++g+       ++l++e+g s+ v l+ + k+gr v+++GWke v++ngLkegD+++F+l+++ ++++v+
  Lus10026264 297 LVKMTRTYLTRYLLYIPLDFTEKNGLTADLIPSMILRNEEGSSFPVGLK-TMKGGRAVIKSGWKEVVQENGLKEGDVLLFQLIET-GTKPVM 386
                  4556778888889***********777776678***************5.6777789*************************984.444443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-15597IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.152695IPR003340B3 DNA binding domain
SuperFamilySSF1019367.65E-156102IPR015300DNA-binding pseudobarrel domain
CDDcd100176.77E-16893No hitNo description
SMARTSM010192.3E-10993IPR003340B3 DNA binding domain
PfamPF023621.4E-111885IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.5E-17148252IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-15149251IPR015300DNA-binding pseudobarrel domain
CDDcd100173.50E-13152252No hitNo description
PfamPF023626.3E-16153252IPR003340B3 DNA binding domain
PROSITE profilePS5086311.293153257IPR003340B3 DNA binding domain
SMARTSM010193.2E-11153257IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-19290389IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.61E-19293389IPR015300DNA-binding pseudobarrel domain
CDDcd100171.29E-16294388No hitNo description
PROSITE profilePS5086313.296295391IPR003340B3 DNA binding domain
SMARTSM010191.4E-16296392IPR003340B3 DNA binding domain
PfamPF023624.5E-16297386IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MADGGKQHFF RPLLPGFEHR LSIPVAFSKH LNGAEDAVLR SSSGKSYPVN TSGREFKGEG  60
WKEFVADQSL HVGDFLVFRY DNTQKVFDIM SFDPSACEFQ YPPSSSSTLP LHASVRTEHD  120
DAEEALDNNS GRKRKETDQL QDKGGRSMPT NPFFVVTMRK YNLKKNRLLI PKEFARDNDL  180
ESMSHRSAIL LNEEGRSWPV DMHSYKKHCF GKYFHQVALR RGIDRFQEEN NLELGDTFNL  240
ELVQGGENPV FKMSGVHFNP MVIEEETEKE RIKKVERKVQ KEQISPASSM TMHPYFLVKM  300
TRTYLTRYLL YIPLDFTEKN GLTADLIPSM ILRNEEGSSF PVGLKTMKGG RAVIKSGWKE  360
VVQENGLKEG DVLLFQLIET GTKPVMTFKV GKLTKSKTFV CSDLDAHPVS CTMLNTCLEL  420
KRFMFHSHID PNTG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10026264
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100262640.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16161410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.12e-44B3 family protein