PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10026409

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

WRKY

Protein Properties

Length: 211aa MW: 23510.9 Da PI: 5.9704

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10026409	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.1	1.9e-33	76	134	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gCpv+k+ver+++d + v++tYeg+Hnh+ Lus10026409 76 LDDGYKWRKYGQKVVKGNPNPRSYYKCTYVGCPVRKHVERASTDLRSVITTYEGKHNHD 134 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.1E-37	61	136	IPR003657	WRKY domain
SuperFamily	SSF118290	1.31E-29	68	136	IPR003657	WRKY domain
PROSITE profile	PS50811	37.597	71	136	IPR003657	WRKY domain
SMART	SM00774	1.2E-37	76	135	IPR003657	WRKY domain
Pfam	PF03106	6.4E-26	77	134	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MDTPENSSIS IGGGDDDFDS HRSGRDEIDE DEPDAKRWRR DVENDGISSS SMAATGSKTV 60 REPRVVVQTR SDIDILDDGY KWRKYGQKVV KGNPNPRSYY KCTYVGCPVR KHVERASTDL 120 RSVITTYEGK HNHDVPAARG SSHSAARRAV QPESNTTAPS MRRPPMVQQH EEVGLGFSEL 180 MMGNAMGESI FNRSTKDEPR DESFLESLLF *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-37	67	137	8	78	Probable WRKY transcription factor 4
2lex_A	2e-37	67	137	8	78	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250\|UniProtKB:Q6IEQ7, ECO:0000250\|UniProtKB:Q6QHD1}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10026409

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250\|UniProtKB:Q6IEQ7, ECO:0000269\|PubMed:16919842, ECO:0000269\|PubMed:25110688}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027334209.1	9e-81	WRKY transcription factor WRKY24-like
Swissprot	Q6B6R4	2e-65	WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBL	A0A3G1KLG9	1e-151	A0A3G1KLG9_LINUS; WRKY transcription factor 36
STRING	Lus10026409	1e-155	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1077	34	114

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	2e-53	WRKY DNA-binding protein 33

Link Out ? help Back to Top
Phytozome	Lus10026409

Publications ? help Back to Top
Basu S,Roychoudhury A Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance. Biomed Res Int, 2014. 2014: p. 706890 [PMID:25110688]