PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10026425
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 227aa    MW: 25748.1 Da    PI: 5.3578
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10026425genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.71.3e-10126219693
                  ..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS....-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
           B3   6 tpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesg....rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                  ++ ++++ +++++p +fa+++   + ++ ++++++ ++ ++    ++  v++  +k++ + y+ ++ W  F kan+L+ gD+++ + +++++   v
  Lus10026425 126 IRQSYFRDNCVMIPVEFARDYlewKDQTVKPIQVSHNNHQNhkskKEGFVEVMKNKTKVEmYMGKQDWPTFTKANHLQLGDVCTSEGMDDDDN--V 219
                  5567778888**************88888998899888777555444445553344443359999*******************997776555..3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.5E-8121215IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.61E-7124209IPR015300DNA-binding pseudobarrel domain
PfamPF023625.5E-8126222IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MQSHPTINLD AGKETTGFED VDANISVQSI QPIISFVYTS FNLGYLKCVL VEIPFVDIEN  60
QGMASGSQTF RKGFRDMEIE NDVEEVGDEI FVDISSNSNT SPRKGRRCMK QSRGKAKIFQ  120
SCDAVIRQSY FRDNCVMIPV EFARDYLEWK DQTVKPIQVS HNNHQNHKSK KEGFVEVMKN  180
KTKVEMYMGK QDWPTFTKAN HLQLGDVCTS EGMDDDDNVL VLCSHL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10026425
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100264251e-170(Linum usitatissimum)