PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10026522
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 467aa    MW: 51924.4 Da    PI: 8.4617
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10026522genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.51.7e-09373419447
                      S-HHHHHHHHHHHHHTTTT-HHHHHH.HHT..TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIar.tmg..kgRtlkqcksrwqky 47 
                      WTt E  +l+++v+q+G g+W+ I + +++  ++Rt+ +++++w+++
      Lus10026522 373 WTTAEVSKLIEGVAQYGIGRWTDIKKfHFPssTHRTPIDIRDKWRNL 419
                      *************************97788***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-14363430IPR009057Homeodomain-like
PROSITE profilePS5129414.34365424IPR017930Myb domain
SMARTSM007172.2E-7369422IPR001005SANT/Myb domain
CDDcd116603.39E-19371421No hitNo description
SuperFamilySSF466891.72E-16373434IPR009057Homeodomain-like
PfamPF139214.5E-10373435No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MAHFDPFGAM TSSQVKVDDF LLPGSRREAH QVQPWLALAE QPTVQTVSTD GLSWFRNDTS  60
WNNSGVGEFL RALEYNPIGG LAHYSTGGQD ASELGVLDGL LGGMPETGHF LAASEISREY  120
EGFLLNQGCD IAAADKVFFE ANHVMSEGLV PRNSSSESQS PALGISNNVA YIGTAESTTA  180
AAGVLEAQFK TIGSVSKTRI CPPEMHGTRL DSEASYDIYG NNLECRDQEN HDQIDTEPSA  240
PGWKWKSAGR RSKRVVKKCS GAKLSYQERS KDAEEEFFTG AVLQTPNESL SRRVTRKRQP  300
VFTVREAFSP PRVLYVLQAT NVLMAFSYSP CLLSLLTLQD LKPDDLYTSS ESEDGRKNKT  360
LGCKNRRKHH VMWTTAEVSK LIEGVAQYGI GRWTDIKKFH FPSSTHRTPI DIRDKWRNLV  420
KSSRNQKRWN QGVDQRQPSR LVLSQAQMGR VMELATIHMR NNKKGC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10026522
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100265220.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-19TRF-like 6