PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10026678
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MIKC_MADS
Protein Properties Length: 218aa    MW: 24646.1 Da    PI: 8.9867
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10026678genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.52.6e-31959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+gklye++s
  Lus10026678  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALILFSSRGKLYEFCS 59
                 79***********************************************96 PP
2K-box73.94.6e-2581161888
        K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                  s++++++++ +q++ kLk++ e L+r+qRhllGe+L++L  keL ++e+qL+ slk+iR  K++l+ +q+++l++k +e++
  Lus10026678  81 SQTSKETQNNYQDYLKLKEKAEDLKRSQRHLLGEELGNLGAKELDEMENQLDGSLKEIRLVKTQLIADQLSNLKQKLEETD 161
                  468889**********************************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.291161IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-40160IPR002100Transcription factor, MADS-box
CDDcd002656.65E-44278No hitNo description
SuperFamilySSF554557.46E-34288IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.9E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-333859IPR002100Transcription factor, MADS-box
PfamPF014862.2E-1983159IPR002487Transcription factor, K-box
PROSITE profilePS5129713.12787177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALILFSS RGKLYEFCSS  60
SSMVKTIEKY QRYTYGQLEP SQTSKETQNN YQDYLKLKEK AEDLKRSQRH LLGEELGNLG  120
AKELDEMENQ LDGSLKEIRL VKTQLIADQL SNLKQKLEET DAAMRHPTWE VGEHSADQQP  180
RQQIITTEKP SASSAVAETV MINGGSGALI GRPPWML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-21187182MEF2 CHIMERA
6byy_B2e-21187182MEF2 CHIMERA
6byy_C2e-21187182MEF2 CHIMERA
6byy_D2e-21187182MEF2 CHIMERA
6bz1_A2e-21187182MEF2 CHIMERA
6bz1_B2e-21187182MEF2 CHIMERA
6bz1_C2e-21187182MEF2 CHIMERA
6bz1_D2e-21187182MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10026678
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6231632e-55AB623163.2 Pyrus pyrifolia var. culta PpMADS9-1 mRNA for MADS-box protein, complete cds.
GenBankAJ0016812e-55AJ001681.1 Malus domestica mRNA for MADS box protein MdMADS8.
GenBankKC4152372e-55KC415237.1 Malus domestica cultivar Fuji Beni Shogun MADS8-2 mRNA, complete cds.
GenBankKC4152382e-55KC415238.1 Malus domestica cultivar Fuji Beni Shogun MADS8-1 mRNA, complete cds.
GenBankKP1640022e-55KP164002.1 Pyrus pyrifolia clone PpSEP1-1 SEP1-like MADS-box protein mRNA, complete cds.
GenBankKP1640162e-55KP164016.1 Pyrus pyrifolia clone PpSEP1-2 SEP1-like MADS-box protein mRNA, complete cds.
GenBankU789472e-55U78947.1 Malus domestica MADS-box protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021903284.13e-86MADS-box protein CMB1
SwissprotQ396853e-78CMB1_DIACA; MADS-box protein CMB1
TrEMBLA0A2K1ZEQ18e-82A0A2K1ZEQ1_POPTR; Uncharacterized protein
TrEMBLM1CR515e-82M1CR51_SOLTU; Uncharacterized protein
STRINGLus100266781e-160(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.12e-75MIKC_MADS family protein