PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10026679
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MIKC_MADS
Protein Properties Length: 232aa    MW: 26936.5 Da    PI: 8.4726
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10026679genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.97.1e-30959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krienk+nrqvtfskRr+g+ KKA+E+SvLCdaeva+i+fs++gkl+ey++
  Lus10026679  9 KRIENKINRQVTFSKRRAGLHKKAHEISVLCDAEVALIVFSHKGKLFEYAT 59
                 79***********************************************86 PP
2K-box97.71.8e-3277171397
        K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                  +++ +++e   + ++  e+++Lk++ie Lqr++Rh++GedL+++s keLq+LeqqL+++lk+iR+++n+l++e+i  lq+kek++qe+n  L k+
  Lus10026679  77 ERQLVATELDSQGNWLMEYNRLKAKIELLQRNHRHYMGEDLDTMSTKELQNLEQQLDSALKNIRTRRNQLMHESITALQRKEKAIQEQNDVLAKQ 171
                  55666666677899****************************************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.9E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.777161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-34290IPR002100Transcription factor, MADS-box
CDDcd002659.34E-43279No hitNo description
PRINTSPR004043.4E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-303859IPR002100Transcription factor, MADS-box
PfamPF014861.3E-2786171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.79488179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009933Biological Processmeristem structural organization
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRAGLHK KAHEISVLCD AEVALIVFSH KGKLFEYATD  60
SCMEKILERY ERYSYAERQL VATELDSQGN WLMEYNRLKA KIELLQRNHR HYMGEDLDTM  120
STKELQNLEQ QLDSALKNIR TRRNQLMHES ITALQRKEKA IQEQNDVLAK QQSHSPYLLQ  180
HQNPPQQLPC LNVGGSYQEE HHHQGHDARG RNDLDLTLEP IYSCNLGCFA A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-22174173MEF2 CHIMERA
6byy_B5e-22174173MEF2 CHIMERA
6byy_C5e-22174173MEF2 CHIMERA
6byy_D5e-22174173MEF2 CHIMERA
6bz1_A6e-22174173MEF2 CHIMERA
6bz1_B6e-22174173MEF2 CHIMERA
6bz1_C6e-22174173MEF2 CHIMERA
6bz1_D6e-22174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00096ChIP-seqTransfer from AT1G69120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10026679
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021623236.11e-127truncated transcription factor CAULIFLOWER A
SwissprotQ6E6S71e-120AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A061EAI91e-124A0A061EAI9_THECC; K-box region and MADS-box transcription factor family protein
STRINGLus100266791e-173(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-115MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]