PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10026684
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 323aa    MW: 35717.6 Da    PI: 5.7713
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10026684genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.71.6e-1663112255
                  HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  r +h+  E+rRR++iN++f+ Lrel+P++    ++K + a+ L +++eY+++Lq
  Lus10026684  63 RSKHSVTEQRRRSKINERFQILRELIPQC----DQKRDTASFLFEVIEYVRYLQ 112
                  889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.06E-1859132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-2261129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.22861111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.98E-1563116No hitNo description
PfamPF000105.7E-1463112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-1167117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MRGKGNQNHH QEEEEYDEEE LVVGSRKDGG APSSNVSATT SNSANNTNSH RDGKNSDKAS  60
AVRSKHSVTE QRRRSKINER FQILRELIPQ CDQKRDTASF LFEVIEYVRY LQEKVQKYEG  120
PYQGWPADPT KLMPWRNSHW QVQNLVGHPQ AMSNGSGMAP VFPAKLDENG ISVTTSSMME  180
PDSLRDAAMM QQADLLNKDG YPDLLRHFQT AALPAVRSDG VDMHHPLQQP LSDPQSAECP  240
MTAEELATEG GTINISSAYS EGLLNALTQA LQTAGVDLSQ ANISLQIDLG KRAKDNQNTL  300
PSNQTPIHPI DGTDHVDKRM KM*
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10026684
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314914.21e-113transcription factor BIM2
RefseqXP_024465346.11e-113transcription factor BIM2
SwissprotQ9CAA46e-91BIM2_ARATH; Transcription factor BIM2
TrEMBLB9HWU21e-112B9HWU2_POPTR; Uncharacterized protein
STRINGLus100266840.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17303382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.17e-79BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]