PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10026724

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

Protein Properties

Length: 261aa MW: 28730.7 Da PI: 4.6491

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10026724	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	44.8	2.3e-14	166	250	1	88
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88 f+ + + s+ ++++ ++p +f+ eh + + e++++ + ++W v++ r ++ +++ +GW +F+++n Lk gD++vFk++ +s Lus10026724 166 FEIKIKASHLCSRQQRRIPLSFTMEHsFMREVEQVKMEV---GDNVWPVRV--RLACNMyVLIPAGWIRFAEDNSLKLGDVCVFKVMATS 250 6667788999999***********8555556544444...55***..88888846678*******************76543 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	4.9E-14	161	250	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.7E-13	162	249	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.91E-15	165	245	No hit	No description
SMART	SM01019	7.2E-8	166	260	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.0E-12	166	250	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.997	166	260	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MASTISFPCM QRIPRKFIST EFGQQLLGCD AATLEVRFPL ETNGKLGWRG IDKGSFGSTT 60 MHGGDLQSST LWTMATSSLS IVTCDISATE IVYPTLSNVD RVVEIERDDS LSLEIVGEVD 120 DTAANEKGKS PIVDDSAETI INEEKEGTNL DDDASGNLFG SGHTLFEIKI KASHLCSRQQ 180 RRIPLSFTME HSFMREVEQV KMEVGDNVWP VRVRLACNMY VLIPAGWIRF AEDNSLKLGD 240 VCVFKVMATS PEVRTIIRGV *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10026724

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10026724	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF98	34	369

Link Out ? help Back to Top
Phytozome	Lus10026724