PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10026733
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 160aa    MW: 18368 Da    PI: 9.7586
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10026733genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.73.3e-1184129655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++Er RR ri  ++ +L++l+P+     +k  s +++L +Av++Ik Lq
  Lus10026733  84 SIAERERRTRISGRLKKLQDLVPNM----DKQTSYSDMLDLAVHHIKGLQ 129
                  689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.49778128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-1381136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.77E-1082133No hitNo description
Gene3DG3DSA:4.10.280.103.3E-1183134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-1184134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-884129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
METWDNNNNS NSITFSSLGG QSNNKRYRNM DGEFYTSYNG LETQFSMPQT TLEMATVDKM  60
LQIPEDSVPC KVRAKRGCAT HPRSIAERER RTRISGRLKK LQDLVPNMDK QTSYSDMLDL  120
AVHHIKGLQN ELEVCMKLRF SRLITKTVNI KICVFDRKN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10026733
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012456514.16e-67PREDICTED: transcription factor bHLH128
RefseqXP_016677778.16e-67PREDICTED: transcription factor bHLH128-like
RefseqXP_016699171.16e-67PREDICTED: transcription factor bHLH128-like
RefseqXP_017646940.16e-67PREDICTED: transcription factor bHLH128
SwissprotQ9ZW811e-55BH129_ARATH; Transcription factor bHLH129
TrEMBLA0A1R3K6D42e-68A0A1R3K6D4_COCAP; Uncharacterized protein (Fragment)
STRINGLus100267331e-117(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76803140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43140.13e-56bHLH family protein