PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10026785

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

C2H2

Protein Properties

Length: 396aa MW: 43292.4 Da PI: 10.506

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10026785	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.00068	178	200	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC C++ Fs + +L Hir + Lus10026785 178 HKCLSCNMIFSKRTSLLIHIRDC 200 79******************966 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	112	135	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	8.559	112	140	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.058	178	207	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MAPPPPPPLQ HTHRRDGTTI SEIDRHQLII HSHQAIMTVA GGPSRILSPV PSDEPSNSKP 60 KTKLGIIRIK IPPTLTPTPT LTPTPLGVAT DEVSGDGSKS DNIKKATNNG PCVCHECHRG 120 FESRKALGGH IRHRHPKNSN DDNNNTAIVI APPPPPPPLP PRGPTMENLK HDREGTAHKC 180 LSCNMIFSKR TSLLIHIRDC NYQSPPPPPT PSPQEDDNNT NNNNNSIITT KFQAPPPPFL 240 AQFPPPNPNN PSRIVAAAVP NLKDVANNII TSLSSWGKKA KRKFCTNSPQ DRDLKDVAND 300 LVQFSSAPVI FEKDEANLKQ KRRFISLSKK ERIRDWVYQE NLKKKKMMMN LHQLIIPSPI 360 QQHGAVSGPA ALGSSSGAAA AQSKGIIQVW KNHKQ*

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MAPPPPPPLQ HTHRRDGTTI SEIDRHQLII HSHQAIMTVA GGPSRILSPV PSDEPSNSKP  60
KTKLGIIRIK IPPTLTPTPT LTPTPLGVAT DEVSGDGSKS DNIKKATNNG PCVCHECHRG  120
FESRKALGGH IRHRHPKNSN DDNNNTAIVI APPPPPPPLP PRGPTMENLK HDREGTAHKC  180
LSCNMIFSKR TSLLIHIRDC NYQSPPPPPT PSPQEDDNNT NNNNNSIITT KFQAPPPPFL  240
AQFPPPNPNN PSRIVAAAVP NLKDVANNII TSLSSWGKKA KRKFCTNSPQ DRDLKDVAND  300
LVQFSSAPVI FEKDEANLKQ KRRFISLSKK ERIRDWVYQE NLKKKKMMMN LHQLIIPSPI  360
QQHGAVSGPA ALGSSSGAAA AQSKGIIQVW KNHKQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10026785

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10026785	0.0	(Linum usitatissimum)

Link Out ? help Back to Top
Phytozome	Lus10026785