PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10026819

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

HSF

Protein Properties

Length: 166aa MW: 19218.1 Da PI: 9.9515

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10026819	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	103.7	1.5e-32	16	118	2	102
HHHHHHHHHCTGGGTTTSEESSSS...........SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS HSF_DNA-bind 2 Flkklyeiledeelkeliswseng...........nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 Fl+k+y++++d+ +++++sw +n ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgFkkv e+ weF +++F+ Lus10026819 16 FLTKTYKLVDDPMTDHIVSWGSNDmndpmaammmmSTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVAAER---------WEFGNDYFR 103 9******************777789999999999************************************999.........***** PP XXXXXXXXXXXXXXX CS HSF_DNA-bind 88 kgkkellekikrkks 102 kg k+ll++i+r+ks Lus10026819 104 KGAKQLLSHIHRRKS 118 ***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	7.3E-47	12	116	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	3.6E-33	13	116	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	8.98E-29	13	116	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.7E-28	16	116	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	66	90	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MQGLYNKGGG GVVAPFLTKT YKLVDDPMTD HIVSWGSNDM NDPMAAMMMM STFVVWRPPE 60 FARDLLPNYF KHNNFSSFVR QLNTYGFKKV AAERWEFGND YFRKGAKQLL SHIHRRKSPH 120 HYNDHHQHDF IFQLPHHHIF LPSPPPPPPA VHYVLSPATV QMMMR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	2e-18	13	116	17	120	Heat shock factor protein 1
5d5u_B	2e-18	13	116	26	129	Heat shock factor protein 1
5d5v_B	2e-18	13	116	26	129	Heat shock factor protein 1
5d5v_D	2e-18	13	116	26	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269\|PubMed:16202242}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10026819

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027368557.1	2e-57	heat stress transcription factor B-4b-like
Swissprot	Q7XHZ0	2e-52	HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBL	A0A061GTY1	5e-55	A0A061GTY1_THECC; Heat shock transcription factor B4
STRING	Lus10026819	1e-120	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1612	33	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46264.1	5e-51	heat shock transcription factor B4

Link Out ? help Back to Top
Phytozome	Lus10026819

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]