PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10026879

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NAC

Protein Properties

Length: 355aa MW: 38834.4 Da PI: 6.8477

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10026879	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.3	2e-55	16	143	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhP+dee++++yL++kv+++++++ ++ e+d++k+ePwdLp k+k +ekewyfF++rdkky+tg r+nrat +gyWkatgkdke+++ +g Lus10026879 16 LPPGFRFHPSDEEIITHYLTEKVKDSNFTA-IAVGEADLNKSEPWDLPCKAKMGEKEWYFFCQRDKKYPTGMRTNRATVAGYWKATGKDKEIFRGRGC 112 79***********************999.88***********999999**************************************** PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 lvg+kktLvfy+grapkgekt+Wvmhe+rle Lus10026879 113 LVGMKKTLVFYRGRAPKGEKTNWVMHEFRLE 143 **************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.8E-61	11	167	IPR003441	NAC domain
PROSITE profile	PS51005	58.378	16	167	IPR003441	NAC domain
Pfam	PF02365	3.2E-28	17	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MEEPAVLNRG HQVLDLPPGF RFHPSDEEII THYLTEKVKD SNFTAIAVGE ADLNKSEPWD 60 LPCKAKMGEK EWYFFCQRDK KYPTGMRTNR ATVAGYWKAT GKDKEIFRGR GCLVGMKKTL 120 VFYRGRAPKG EKTNWVMHEF RLEGNFSYYS FPKASKDEWV VCRVFHKSPA SSSGGGVMMK 180 RPSPVEELMR PSSSAFGDDF FDCSLSLPPL MDLPYADSVL NDFAKQLPNS NNYSNTFTNH 240 HHLISSSNSP YIGGGGGGRG GVQLYTFPNS AAAGYLHRGG YGHECKLEQQ QSMVSLSQDT 300 GLSTDNMNAA PEISSKQLGM GISGGGGGGG EDPSTSAGGS TSGMVELDSF WDNY*

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MEEPAVLNRG HQVLDLPPGF RFHPSDEEII THYLTEKVKD SNFTAIAVGE ADLNKSEPWD  60
LPCKAKMGEK EWYFFCQRDK KYPTGMRTNR ATVAGYWKAT GKDKEIFRGR GCLVGMKKTL  120
VFYRGRAPKG EKTNWVMHEF RLEGNFSYYS FPKASKDEWV VCRVFHKSPA SSSGGGVMMK  180
RPSPVEELMR PSSSAFGDDF FDCSLSLPPL MDLPYADSVL NDFAKQLPNS NNYSNTFTNH  240
HHLISSSNSP YIGGGGGGRG GVQLYTFPNS AAAGYLHRGG YGHECKLEQQ QSMVSLSQDT  300
GLSTDNMNAA PEISSKQLGM GISGGGGGGG EDPSTSAGGS TSGMVELDSF WDNY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-50	14	172	15	170	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-50	14	172	15	170	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-50	14	172	15	170	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-50	14	172	15	170	NO APICAL MERISTEM PROTEIN
3swm_A	2e-50	14	172	18	173	NAC domain-containing protein 19
3swm_B	2e-50	14	172	18	173	NAC domain-containing protein 19
3swm_C	2e-50	14	172	18	173	NAC domain-containing protein 19
3swm_D	2e-50	14	172	18	173	NAC domain-containing protein 19
3swp_A	2e-50	14	172	18	173	NAC domain-containing protein 19
3swp_B	2e-50	14	172	18	173	NAC domain-containing protein 19
3swp_C	2e-50	14	172	18	173	NAC domain-containing protein 19
3swp_D	2e-50	14	172	18	173	NAC domain-containing protein 19
4dul_A	1e-50	14	172	15	170	NAC domain-containing protein 19
4dul_B	1e-50	14	172	15	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00518	DAP	Transfer from AT5G18270	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10026879

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021620729.1	1e-123	NAC domain-containing protein 100-like
Swissprot	Q9FK44	1e-109	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A0M4FBP6	1e-122	A0A0M4FBP6_MANES; NAC transcription factors 15
STRING	Lus10026879	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	1e-109	Arabidopsis NAC domain containing protein 87

Link Out ? help Back to Top
Phytozome	Lus10026879

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]