PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10027064
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 139aa    MW: 15366.7 Da    PI: 8.8462
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10027064genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.90.0002138721554
                 HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 +  +++  L++l+ +      +K + a++L +A+eYI+ L
  Lus10027064 38 KFGERIVLLQQLVSPY-----GKTDTASVLLEAMEYIHFL 72
                 5556777777777777.....9***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.5062372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-72482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-113389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.26E-53377No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MMENKRSPCF LDQGNITSLS TKRHKADPSV PMKDRKEKFG ERIVLLQQLV SPYGKTDTAS  60
VLLEAMEYIH FLHDQVKVLS APYLQTTPPP RMQGLDEYSL RSRGLCVVPV CLTAGVANSN  120
GADLWAPTKT TNPISQLH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10027064
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021688923.13e-73transcription factor bHLH153-like isoform X1
RefseqXP_021688924.13e-73transcription factor bHLH153-like isoform X1
RefseqXP_021688925.13e-73transcription factor bHLH153-like isoform X2
SwissprotQ7XJU29e-56BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A2C9V2101e-70A0A2C9V210_MANES; Uncharacterized protein
STRINGLus100270641e-100(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108133138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.54e-58bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]