PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10027175
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HD-ZIP
Protein Properties Length: 822aa    MW: 87844.7 Da    PI: 5.7682
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10027175genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.21.9e-20133188156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Lus10027175 133 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 188
                  688999***********************************************999 PP
2START215.81.5e-673325531206
                  HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
        START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                  ela +a++e+v++a+ +ep+W++         +n+de++++f+++ +     +++ea+r+++vv+m++++lve l+d++ qW   +     +a+tlev
  Lus10027175 332 ELAVAAMEEVVRMAQMGEPLWMTNGldgsdPVLNEDEYIRTFPRGIGpkpngFKSEASRETAVVIMNHVNLVEYLMDVN-QWAGLFSgivsRAMTLEV 428
                  57899******************999999999************999********************************.99999988898******* PP

                  ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
        START  85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                  +s+g      galq+m+aelq+++plvp R+++f+Ry++q+++g+w++vdvS+d  ++ p    v+R++++pSg+li++++ng+skvtw+ehv++++r
  Lus10027175 429 LSTGvagnynGALQVMTAELQLPTPLVPtRESYFARYCKQHSDGTWAVVDVSLDDLRPSP----VARCRKRPSGCLIQEMPNGYSKVTWIEHVEVDDR 522
                  **********************************************************98....7********************************* PP

                  XXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 176 lphwllrslvksglaegaktwvatlqrqcek 206
                   +h+l++++v+sg+a+gak+wvatl+rqce+
  Lus10027175 523 GVHNLYKQIVGSGHAFGAKRWVATLDRQCER 553
                  *****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-23113188IPR009057Homeodomain-like
SuperFamilySSF466891.0E-19118190IPR009057Homeodomain-like
PROSITE profilePS5007116.925130190IPR001356Homeobox domain
SMARTSM003892.9E-19131194IPR001356Homeobox domain
CDDcd000863.11E-19133191No hitNo description
PfamPF000464.7E-18133188IPR001356Homeobox domain
PROSITE patternPS000270165188IPR017970Homeobox, conserved site
PROSITE profilePS5084843.373323556IPR002913START domain
SuperFamilySSF559613.85E-33325555No hitNo description
CDDcd088751.48E-126327552No hitNo description
SMARTSM002342.8E-62332553IPR002913START domain
PfamPF018522.1E-56333553IPR002913START domain
Gene3DG3DSA:3.30.530.206.1E-5427547IPR023393START-like domain
SuperFamilySSF559618.63E-22572808No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 822 aa     Download sequence    Send to blast
MPAGVMVPAR NMASSAAILR SNGGTGTSSS SSVVGLGGFG SSTTLPILGQ GSMMDDVDGM  60
VGGGGGHHHH HQLQYLHLDM MTHHATPESN DFPGGGGEFD ISGNTKSGGS DNQDGGGGSG  120
DDQEHQQQPP NKKKRYHRHT QHQIQEMEAF FKECPHPDDK QRKELSRELG LEPLQVKFWF  180
QNKRTQMKTQ HERLENNQLR SENDKLRADN MRYREALTNT SCPNCGGPTA VGEMSFDEHH  240
LRLENARLRE EIDRISGIAA KYVGKPVVNF PLLSSPMAPR PVELRVGNFG GGEHQPAAAD  300
GGGGVDMYGG GAGDLLRSIS GPAEADKPII IELAVAAMEE VVRMAQMGEP LWMTNGLDGS  360
DPVLNEDEYI RTFPRGIGPK PNGFKSEASR ETAVVIMNHV NLVEYLMDVN QWAGLFSGIV  420
SRAMTLEVLS TGVAGNYNGA LQVMTAELQL PTPLVPTRES YFARYCKQHS DGTWAVVDVS  480
LDDLRPSPVA RCRKRPSGCL IQEMPNGYSK VTWIEHVEVD DRGVHNLYKQ IVGSGHAFGA  540
KRWVATLDRQ CERLASAMAT NIPTNDVGVI TNQEGRKSMM KLAERMVVSF CAGVSASTAH  600
TWTTLSGTGA DDVRVMTRKS IDDPGRPPGI VLSAATSFWI PVAPKRVFDF LRDENSRSEW  660
DILSNGGAVQ ERAQIANGRD TGNCVSLLRV NSANSSQGNM LILQESCTDQ TASFVIYAPV  720
DIVAMNVVLN GGDPDYVALL PSGFAILPDG NAGGEAEGGG DGGAGGGGGS LLTVAFQILV  780
DSVPTAKLSL GSVATVNSLI ACTVERIKAA LSCENAASAN L*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10027175
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002524172.20.0homeobox-leucine zipper protein HDG2 isoform X3
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A067JPN90.0A0A067JPN9_JATCU; Uncharacterized protein
STRINGLus100271750.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2