PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10027197
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB
Protein Properties Length: 238aa    MW: 27303.7 Da    PI: 6.9864
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10027197genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.4e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv+ +  +G  +W+++++  g++R++k+c++rw +yl
      Lus10027197 14 KGPWTAEEDRKLVNFIVTHGQCCWRAVPKLAGLRRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding49.31.1e-1569111347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         + E+ + +d++ +lG++ W++Ia++++ gRt++++k++w+++
      Lus10027197  69 VLNESEERIVIDLHSRLGNR-WSKIAAELP-GRTDNEIKNHWNTH 111
                      55689***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.2E-22562IPR009057Homeodomain-like
PROSITE profilePS5129415.348961IPR017930Myb domain
SuperFamilySSF466892.01E-2711108IPR009057Homeodomain-like
SMARTSM007175.0E-141363IPR001005SANT/Myb domain
PfamPF002492.4E-151461IPR001005SANT/Myb domain
CDDcd001675.94E-101661No hitNo description
PROSITE profilePS5129425.70562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2363117IPR009057Homeodomain-like
SMARTSM007171.3E-1466114IPR001005SANT/Myb domain
PfamPF002499.6E-1469111IPR001005SANT/Myb domain
CDDcd001671.57E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGRQPCCDKL GVKKGPWTAE EDRKLVNFIV THGQCCWRAV PKLAGLRRCG KSCRLRWTNY  60
LRPDLKRGVL NESEERIVID LHSRLGNRWS KIAAELPGRT DNEIKNHWNT HIKKKLIKMG  120
IDPVTHKPLD DKAKETTAYD VDHHGPQRDS CISDNDSFDE FRQFESKSMS TLSWSSELLS  180
VDDHIDSTWR PWSDTEFKKE LGSVGDHHLD DHHFSLLNGF NGFGEIDLLS DMNEHIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10027197
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015581058.11e-89protein ODORANT1
SwissprotQ50EX65e-85ODO1_PETHY; Protein ODORANT1
TrEMBLA0A058ZY379e-88A0A058ZY37_EUCGR; Uncharacterized protein
TrEMBLA0A058ZYZ91e-88A0A058ZYZ9_EUCGR; Uncharacterized protein
STRINGLus100271971e-176(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65334142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.13e-84myb domain protein 20
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]