PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10027394
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 262aa    MW: 28786.6 Da    PI: 9.5985
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10027394genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.52.1e-1278130155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++ h  +Er+RR+++   ++ Lr+llP  +   ++K s ++   +Av+YIk+L+
  Lus10027394  78 KKVLHRDVERQRRQEMSALYASLRSLLPLEF--VKGKRSMSDHMNEAVNYIKQLE 130
                  5788*************************65..********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-1371142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.73877129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-978130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.05E-1178134No hitNo description
Gene3DG3DSA:4.10.280.101.5E-1079142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-583135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MFPLHQGNEL CFQIDSIPQQ DLILPPTTTT STNLLHNYHL HGTTTATGRR RRENPATAAM  60
ENNNGNSGAG GATTTNIKKV LHRDVERQRR QEMSALYASL RSLLPLEFVK GKRSMSDHMN  120
EAVNYIKQLE RRIKELEGKR NEVNVLTNGN GNGNNNAAAV LTNGSAGTKS SVEVRRCLAG  180
VEVFLTSPAE VGWRLSGVMR VMAEEGLTVV NCNSTKVNRT CFHTLHAEVE DPTNLNLRGL  240
QQKLIPLIVP PSSSVDQHAW K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10027394
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090357.12e-68transcription factor bHLH118
TrEMBLA0A067JQS64e-67A0A067JQS6_JATCU; Uncharacterized protein
STRINGLus100273940.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.11e-40bHLH family protein