PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10027395
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 251aa    MW: 28027.9 Da    PI: 8.7236
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10027395genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.71.4e-1072122355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                   ah  +Er+RR+++ +    Lr+llP+      ++K   ++  + A++YIk+Lq
  Lus10027395  72 IAHRDVERQRRKEMADLHGSLRSLLPShY---IKGKRAASDQMQAAIDYIKELQ 122
                  58*************************77...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1014473.92E-55064No hitNo description
PROSITE profilePS5088812.42469121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-1172142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-773122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.78E-773123No hitNo description
Gene3DG3DSA:4.10.280.101.5E-1073138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF1014473.92E-5140148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MFPHNSKQIS FDPNDSNQEE DPLIFFPSDF TSPFTFNIPP QGHLIFQQPP PPPPPALQDP  60
PPPPPTQNLR NIAHRDVERQ RRKEMADLHG SLRSLLPSHY IKGKRAASDQ MQAAIDYIKE  120
LQRRTTQLGA KRDELKATST ISNTFYAAAN TNHETATSSS RRAITGGVVV LVRRCLIGME  180
VVISGSNIVD HHRVSRVLKL LMEQGLNVLT IDSVRVNDRL IHTIQSEVSE SSPCVDAAEL  240
QRLLMRQLGY *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16981RNIAHRDVERQRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10027395
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100273950.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.15e-42bHLH family protein