PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10027396
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 247aa    MW: 27230.3 Da    PI: 6.2883
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10027396genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.1e-0976129155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  r+ + +e+ErrRR+++ +  + L +llP++ + ++kK s ++   ++ +YI++L+
  Lus10027396  76 RKLSRKEIERRRRQQMSDLHSSLISLLPQP-SRKGKKSSLSDQMDEVANYINHLK 129
                  577889***********************7.578888****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.5E-973144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.46E-873133No hitNo description
SuperFamilySSF474591.57E-1174151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.63975128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-676128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.002981134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MFSFSYDAPQ QPEDCVVDDF LIWAASTTTA AAAANVYTHY SAPPPPVILQ PYKTGDETLK  60
SIALGSGRTG GGDEDRKLSR KEIERRRRQQ MSDLHSSLIS LLPQPSRKGK KSSLSDQMDE  120
VANYINHLKS NVQELSNRRD NLIKGMTRAL PSSNNYSSSA TSSNSDVDNA TSSVTVRQRF  180
DGVEVVISRG GFVLSKVMEA VIEEGFDIMS CISTQIGGRF YNTMQCQISS REESTVERNR  240
SLEVRE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10027396
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB9ICZ59e-40B9ICZ5_POPTR; Uncharacterized protein
STRINGLus100273960.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25400.12e-20bHLH family protein