PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10027398
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Trihelix
Protein Properties Length: 918aa    MW: 102583 Da    PI: 7.5308
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10027398genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix25.63.3e-081151721875
     trihelix  18 eerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 
                  +++  rgk ++ + +ev++++ + g++r +k+   kw+n+ ++++k+ e+e++++ ++
  Lus10027398 115 QSTATRGKTRAEKDREVAEFLNRNGINRDAKTAGTKWDNMLGEFRKVYEWERGGERDR 172
                  566678899999****************************************985444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500118.401608912IPR000719Protein kinase domain
SuperFamilySSF561121.31E-12757914IPR011009Protein kinase-like domain
Gene3DG3DSA:1.10.510.105.8E-8759913No hitNo description
CDDcd001805.59E-9771910No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 918 aa     Download sequence    Send to blast
MEAPLSYPLQ TPYHHRRRTG NSSHRLLLRH CHVSATSSPT PPPPVASLST NKPTAESPAD  60
DQIQTQTHQT RKGKFVSPVW KPNEMLWLAK AWRAQYNNNS NHNQSSSSVD YDVIQSTATR  120
GKTRAEKDRE VAEFLNRNGI NRDAKTAGTK WDNMLGEFRK VYEWERGGER DRIGKSYFRL  180
SPYERKLHRL PASFDEEVFD ELSQFMGSRI RSAPSRGAGL LVNTTTSSGE DPKNVVVSGK  240
TINTTPPARS LLLPPPPFKD DDFLNLPLSS DRSSKQLVMS GGAMEPYNFH GLRSINTSLL  300
GFDSSTMEPA GVGSTLTNNV KELRRIGKVR MTWEESVSLW AEEGEHHRGR IKIQGSSFLN  360
ADELMFFDDS MIACTMESFE DNVGVLSALR GFSVDKFVPG QHIKVFGRKK SKSSPSTSVP  420
LTEIRPITMA TVEYQDPTEY YMSCFRAPPL TLPTLFELSW YIQEPPPEEL RFPIRKDVYK  480
DLPHGKELFF TTTESLLDSK SFAFDLVGPL VRSCNNVITP SSRDSFVGLW DDCVNRLVSK  540
FCSFDLTVVR KSLSSFSPSS SLQDQWPNVT GFVKGLCLWR GEEVDRLTEG NEFEPSTAIA  600
EKLMWTYDDL PYVLGYYAVG YTVTFCAMCR SSSSSSSQQI IRTDLYSLDL SSPSDRLRAL  660
VPCYRIGGLL TLLADRCSST KAYSDFERWF GAESNGSVLM EATPNTMTRY YPSRRKLSAV  720
KEIYDILDQR IPHSEFIAHS SEKDLALVFK PRGLRFKPTN CEQLVESLIY VTKALVALHD  780
LSFMHRDLSW EKVMLRTGEN GSGSSQEWFV CGFDEAVAAP ALCPREGGGC GRHAPEMGRG  840
LHGVKVDVWG VGELVRTYGL FAGPGSGMRS GSGMGSGSGG VVQLLRELQN RCLDQNPELR  900
PTAADCYHHL SQLQSMQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10027398
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007038523.20.0PREDICTED: uncharacterized protein LOC18605455 isoform X1
TrEMBLA0A1Q3B1V00.0A0A1Q3B1V0_CEPFO; Uncharacterized protein
STRINGLus100273980.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118572831
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.12e-06Trihelix family protein