PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10027469

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

ERF

Protein Properties

Length: 213aa MW: 23511.3 Da PI: 8.5663

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10027469	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.8	3.1e-19	72	123	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 sgy+GVr ++ +g+++AeIrd + ng +r++lg+f+t eeAa a+++a+ +l g Lus10027469 72 SGYRGVRTRP-WGKYAAEIRDSTRNG--ARVWLGTFDTSEEAALAYDQAAMSLQG 123 89***999.******44465..********************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	4.4E-14	72	123	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.11E-22	72	132	IPR016177	DNA-binding domain
CDD	cd00018	2.14E-29	72	133	No hit	No description
PROSITE profile	PS51032	22.787	73	131	IPR001471	AP2/ERF domain
SMART	SM00380	7.2E-34	73	137	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	8.0E-30	74	132	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.1E-10	74	85	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.1E-10	97	113	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MSDPYYYSPS PLYLSSPPQW SPVEFGEQTP LFSPPSNYYT ISPSPAYPPV LEEATSSSGK 60 KKSKQNNAVY KSGYRGVRTR PWGKYAAEIR DSTRNGARVW LGTFDTSEEA ALAYDQAAMS 120 LQGTRAVLNF PADEVSRSLD EIGCPLGECS SPAKALKQTH LIKRKALNQK KKGGKRGVDP 180 QTQPPYQDVI EFEDLGPTFL ERLLIETSTT NY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-26	74	133	15	74	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10027469

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX174444	0.0	JX174444.1 Linum usitatissimum clone LuBAC317I7, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024189920.1	3e-48	ethylene-responsive transcription factor 1B-like
TrEMBL	A0A2P6R5M0	7e-47	A0A2P6R5M0_ROSCH; Putative transcription factor AP2-EREBP family
STRING	Lus10027469	1e-155	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF311	33	199

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23240.1	3e-44	ethylene response factor 1

Link Out ? help Back to Top
Phytozome	Lus10027469