PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10027621
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 239aa    MW: 26818.9 Da    PI: 10.0757
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10027621genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.72.3e-12556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE+e l  +++++G+g Wk I +          R+  ++k++w++ 
      Lus10027621  5 KQKWTAEEEEALRAGIAKHGTGKWKNIQQDPEfnpylSSRSNIDLKDKWRNM 56
                     79***********************************9************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.644162IPR017930Myb domain
SuperFamilySSF466891.29E-16259IPR009057Homeodomain-like
SMARTSM007177.6E-9459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-15557IPR009057Homeodomain-like
PfamPF002494.9E-9555IPR001005SANT/Myb domain
CDDcd116602.76E-21657No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGNPKQKWTA EEEEALRAGI AKHGTGKWKN IQQDPEFNPY LSSRSNIDLK DKWRNMCVAP  60
GEKSRTPKPK PAPPLFSLPC LIKPGVVNMQ QRHELPQNVR KQITSRLRVT SFHPPVGFLI  120
FVVISLFFSQ FVCHYACPES YRFKESKPSV VKAPSPKKEV QAKGLERVNS VTPIETLEEA  180
ALAAANRIAE AENKDRFAAE AVKESERLSI LREKAESILL FSQQIYDRSK YAAGDGKV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10027621
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8871282e-62HQ887128.1 Linum usitatissimum clone GMU2AYZ01AG523 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002514135.15e-52telomere repeat-binding factor 4
TrEMBLA0A2P2L4C76e-53A0A2P2L4C7_RHIMU; Uncharacterized protein
STRINGLus100276211e-176(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32282958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.18e-29MYB_related family protein