PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10027633
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HD-ZIP
Protein Properties Length: 203aa    MW: 22654.5 Da    PI: 9.7321
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10027633genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.33.1e-1976130256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ ++tkeq + Le+ F+ ++++++++++ LA++l+Lt rqV vWFqNrRa+ k
  Lus10027633  76 RKKLRLTKEQSTLLENTFNVHNTLTQSQKQALADRLNLTPRQVEVWFQNRRARTK 130
                  678899***********************************************98 PP
2HD-ZIP_I/II114.46.8e-3776162187
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                  +kk+rl+keq++lLE++F+ +++L++++K++la +L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en++L+k+  +L
  Lus10027633  76 RKKLRLTKEQSTLLENTFNVHNTLTQSQKQALADRLNLTPRQVEVWFQNRRARTKLKQTEVDCEFLKKRCESLSSENRKLKKQILDL 162
                  69********************************************************************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.84E-1958133IPR009057Homeodomain-like
PROSITE profilePS5007117.31372132IPR001356Homeobox domain
SMARTSM003891.8E-1674136IPR001356Homeobox domain
PfamPF000461.8E-1676130IPR001356Homeobox domain
CDDcd000861.66E-1576133No hitNo description
Gene3DG3DSA:1.10.10.603.8E-1876130IPR009057Homeodomain-like
PROSITE patternPS000270107130IPR017970Homeobox, conserved site
PfamPF021837.9E-8132162IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.1E-9132174IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MDDDQEECCN TALALALTIS QPTNNKCSPP PSTAVSFNLF PKQEEDGAVV MESHRKSSSS  60
TDGGEWARRR IVDSGRKKLR LTKEQSTLLE NTFNVHNTLT QSQKQALADR LNLTPRQVEV  120
WFQNRRARTK LKQTEVDCEF LKKRCESLSS ENRKLKKQIL DLGLGCSYNI TSSSSSSPAP  180
ELVICRSCQK RNSRSSSGRR SG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124132RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10027633
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008390670.24e-46homeobox-leucine zipper protein HAT22-like
RefseqXP_023885509.15e-46homeobox-leucine zipper protein HAT14-like
SwissprotP466042e-39HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A498HPF79e-45A0A498HPF7_MALDO; Uncharacterized protein
STRINGLus100276331e-146(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-41HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]