PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10027695
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB
Protein Properties Length: 541aa    MW: 62033.9 Da    PI: 6.1761
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10027695genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.61.4e-18199245148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT +Ed +lv++v+q+G + W+ Ia++++ gR +kqc++rw+++l
      Lus10027695 199 KGQWTVDEDRILVQLVEQYGIRKWSHIAQMLP-GRIGKQCRERWHNHL 245
                      799*****************************.*************97 PP
2Myb_DNA-binding50.93.5e-16251293145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++ WT+eEd+ l++ +++ G++ W+ Ia+ ++ gRt++++k++w+
      Lus10027695 251 KDTWTEEEDKVLIQSHAEIGNK-WAEIAKSLP-GRTENSIKNHWN 293
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.656194249IPR017930Myb domain
SuperFamilySSF466898.99E-32196292IPR009057Homeodomain-like
SMARTSM007175.5E-17198247IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-28200252IPR009057Homeodomain-like
CDDcd001671.55E-15202245No hitNo description
PfamPF139211.9E-17202256No hitNo description
SMARTSM007179.8E-16250298IPR001005SANT/Myb domain
PROSITE profilePS5129420.225250300IPR017930Myb domain
CDDcd001677.75E-12253296No hitNo description
Gene3DG3DSA:1.10.10.605.7E-22253298IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MKQHQYQPED EFPRYDLPPP PPQELHNHEE EDDDDRFHGE NRWSSNQVYG GGVHSTSAGS  60
NFDSFDAFPY GSCSSLNVDC FEYECKPFSD INIGYMNFHN NNNNNYFDQR NLMVGSSSSH  120
NNQMLNQEEA EMIKPAAATA AVMMNSDELN LYNNNHQCDQ HYLKSSNNNT HLSTRRSGSS  180
PATATKKTWK GRKKNNVVKG QWTVDEDRIL VQLVEQYGIR KWSHIAQMLP GRIGKQCRER  240
WHNHLRPDIK KDTWTEEEDK VLIQSHAEIG NKWAEIAKSL PGRTENSIKN HWNATKRRQY  300
SKRKCRSKYP RDSILQDYIK SLNLDSTSAA ANSLIPSKRS SSSPTIPNKA NSSLLDDHYQ  360
QDDLSENDRL VPTFYYNNEE VPDFGFDGCN LDSLLDGLPP IVDDKSFDDL DVPIEDQQAS  420
TVVPLLRDDF EYLCHQSDNE CFTHKIRVNT ISVPNLSTLE DFSRYTVGSG IVEDISVNTP  480
YYLFPPQSLA VKKRMPLLGK NWSSQPLHQF LHQSLRVLLG IQLQFLKKLM EFKEVLSWAA  540
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-441972992104C-Myb DNA-Binding Domain
1msf_C4e-441972992104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10027695
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002511387.21e-122transcription factor MYB98
TrEMBLA0A2C9UKE51e-116A0A2C9UKE5_MANES; Uncharacterized protein
STRINGLus100276950.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.12e-86myb domain protein 98