PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10027722
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 221aa    MW: 24255.2 Da    PI: 5.6367
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10027722genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.31e-1451100154
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                  + ykGVr+  ++g+Wv+eIr+p +n  + r++lg+f  +e A ka++ a+++l 
  Lus10027722  51 PVYKGVRR--RNGKWVCEIRHPQNN--KSRIWLGTFTCPEPAGKAHDVAALALG 100
                  68****85..47*********9877..5**********************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-851101IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-1552110IPR016177DNA-binding domain
SMARTSM003803.3E-1752115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-2352110IPR001471AP2/ERF domain
PROSITE profilePS5103217.84652109IPR001471AP2/ERF domain
CDDcd000181.03E-1953111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MDYCSVDDEG TIQPSSSSGA GNDQNRSSPS ASPPPPKRKT GRKKFQETRH PVYKGVRRRN  60
GKWVCEIRHP QNNKSRIWLG TFTCPEPAGK AHDVAALALG AEVGKLNFPE LAHVLPRARS  120
DSISDIQCAV ATVRTAVNGG GGGDVEGENL RRMTLEVETN YSGDTMMFVD EEEIFNMPVL  180
LDSMAEGLLV TPPAMKRGWF WNEVVDDGDE HCMDLTLWTH *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10027722
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012066513.11e-62dehydration-responsive element-binding protein 1F
SwissprotA2WZI43e-43DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
SwissprotQ8S9Z53e-43DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBLB9SRI01e-62B9SRI0_RICCO; Dehydration-responsive element-binding protein 1B, putative
STRINGLus100277221e-165(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.15e-35C-repeat/DRE binding factor 1
Publications ? help Back to Top
  1. Wang Q, et al.
    Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice.
    Plant Mol. Biol., 2008. 67(6): p. 589-602
    [PMID:18470484]
  2. Liu HH,Wang YG,Wang SP,Li HJ
    Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses.
    Genet. Mol. Res., 2015. 14(1): p. 2331-40
    [PMID:25867379]