PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10027773

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

MYB_related

Protein Properties

Length: 728aa MW: 84036 Da PI: 4.9124

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10027773	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.1	9.7e-09	670	698	2	30
SSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIart 30 +rWT+ E++ l+d+vk++G+g+Wk+I + Lus10027773 670 NRWTAVEEKALADGVKEYGSGSWKLILES 698 69************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.8E-6	663	698	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.06E-7	666	709	IPR009057	Homeodomain-like
Pfam	PF00249	1.7E-6	670	698	IPR001005	SANT/Myb domain
CDD	cd11660	2.02E-6	671	709	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 728 aa Download sequence Send to blast
MEKVMDDLKL AEANQGSLSK LMNELQSKSS LILSFALHWK DLDLQYHTIR EALHQQAQEL 60 ALQRTEIEEA RKKVELHETE VLVKLETPHC DIGVLDSKLD SKKKELQKKE RDLRFVLERA 120 EDCEVELERK EMEMGVLEKA LTKIRKQICE REGEMDCVQK SIESKATELE AKEMELCELE 180 LEVSGKREEL CSLDKSLALR HDDMDRLGNL NSNRTSELEA KEKELAEVSA LITELKAECE 240 LNERHLITVV DNLEEKERNL AEVKNEIMNL SGVCELKEAE FASVKNLMTE RTAQLESREE 300 QLSSVAEELE EKQRLLEFVD KALVVNTGDV YAKEKELFAL QKQVSVVNSE HKLKEEELAA 360 LQDKIQFFCK EIDMKEAEFS GIKASIEECL KDLDMKKEEL NATENLSEKQ HDEIYLNQFR 420 LDSISELVKE YDEELESKEK ELELKETALS SIETSIKGRD KVLRVKKNPH TFIQSKIHKC 480 SKELESMKDQ TISIKTLIEE FALALESSVE KTVDLAGERM KQCFESEKME LIEMRNKLTE 540 KRTNVEERGV AVETERLELQ KEVERFDLSK EELVLKEKVM EERVAEIEAK EKQLSKLLDE 600 HQRNKQLPET GKEFVVYAAV NDLLPSVRMD VSVCSSVHGP SHGRRKRTRT QCQKKDLVPP 660 LAKKARRKMN RWTAVEEKAL ADGVKEYGSG SWKLILESRQ EVFVERTQVY TYTPTPSRTV 720 TITKHGF*

Sequence ? help Back to Top

Protein Sequence Length: 728 aa Download sequence Send to blast

MEKVMDDLKL AEANQGSLSK LMNELQSKSS LILSFALHWK DLDLQYHTIR EALHQQAQEL  60
ALQRTEIEEA RKKVELHETE VLVKLETPHC DIGVLDSKLD SKKKELQKKE RDLRFVLERA  120
EDCEVELERK EMEMGVLEKA LTKIRKQICE REGEMDCVQK SIESKATELE AKEMELCELE  180
LEVSGKREEL CSLDKSLALR HDDMDRLGNL NSNRTSELEA KEKELAEVSA LITELKAECE  240
LNERHLITVV DNLEEKERNL AEVKNEIMNL SGVCELKEAE FASVKNLMTE RTAQLESREE  300
QLSSVAEELE EKQRLLEFVD KALVVNTGDV YAKEKELFAL QKQVSVVNSE HKLKEEELAA  360
LQDKIQFFCK EIDMKEAEFS GIKASIEECL KDLDMKKEEL NATENLSEKQ HDEIYLNQFR  420
LDSISELVKE YDEELESKEK ELELKETALS SIETSIKGRD KVLRVKKNPH TFIQSKIHKC  480
SKELESMKDQ TISIKTLIEE FALALESSVE KTVDLAGERM KQCFESEKME LIEMRNKLTE  540
KRTNVEERGV AVETERLELQ KEVERFDLSK EELVLKEKVM EERVAEIEAK EKQLSKLLDE  600
HQRNKQLPET GKEFVVYAAV NDLLPSVRMD VSVCSSVHGP SHGRRKRTRT QCQKKDLVPP  660
LAKKARRKMN RWTAVEEKAL ADGVKEYGSG SWKLILESRQ EVFVERTQVY TYTPTPSRTV  720
TITKHGF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10027773

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10027773	0.0	(Linum usitatissimum)

Link Out ? help Back to Top
Phytozome	Lus10027773