PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10027781
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 258aa    MW: 28897.5 Da    PI: 9.5476
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10027781genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.76.3e-14113157347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + +++G+g+W+ I+r +  +Rt+ q+ s+ qky
      Lus10027781 113 PWTEEEHRQFLLGLEKYGKGDWRNISRNFVMTRTPTQVASHAQKY 157
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-12103158IPR009057Homeodomain-like
PROSITE profilePS5129419.909106162IPR017930Myb domain
SuperFamilySSF466891.94E-17107162IPR009057Homeodomain-like
TIGRFAMsTIGR015576.4E-18109161IPR006447Myb domain, plants
SMARTSM007171.8E-12110160IPR001005SANT/Myb domain
CDDcd001671.35E-11113158No hitNo description
PfamPF002492.8E-12113157IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MERGMEILSP ASCRRRPTCR TQGGCSRRAR GRNGRAKRTR VGDVIKQYRE LEEDVSDIEA  60
GLIPVPAGFD VGSADSFTLE LVNSHSYDEL KEFYSPGGKR TRACEQERKR GVPWTEEEHR  120
QFLLGLEKYG KGDWRNISRN FVMTRTPTQV ASHAQKYFIR QSTGGKDKKR SSIHDITTVN  180
HPTDSKQQLH SSPDHSTTTM DTKLDTNVMM GGANVCGMMS SSSPYGLQLQ EQKSLILMGG  240
PPSYGLVYQQ MQSMQNQ*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10027781
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021646461.16e-85transcription factor DIVARICATA-like
SwissprotQ8S9H71e-67DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLQ66RN19e-84Q66RN1_HEVBR; MYB transcription factor
STRINGLus100277810.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-67MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]