PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10027797
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Dof
Protein Properties Length: 197aa    MW: 21963.3 Da    PI: 8.479
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10027797genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof115.62e-362185262
       zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGg....grrknkkss 62
                 ++++l+cprCds+ntkfCyynny+lsqPr+fCk CrryWtkGGalrn+PvGg    g+rkn k+s
  Lus10027797 21 EQEQLNCPRCDSSNTKFCYYNNYNLSQPRFFCKDCRRYWTKGGALRNIPVGGggggGTRKNAKRS 85
                 57899*********************************************862222689988766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-241384IPR003851Zinc finger, Dof-type
PfamPF027011.6E-312373IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.1582579IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102763IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MQDPASEFPM INQQLAPPFP EQEQLNCPRC DSSNTKFCYY NNYNLSQPRF FCKDCRRYWT  60
KGGALRNIPV GGGGGGGTRK NAKRSSNSNQ KRANPDPIPD SSPSVTRRLV SEPTSPPSSS  120
SVPLGADQDP TRLYGPEPGR DTGLDSELSQ FPHQIWFRKS EMQWKHLELE EPQQIRKEPA  180
AGDATGFHLW PSSPNR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10027797
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021645559.11e-47dof zinc finger protein DOF3.1-like
RefseqXP_021645560.11e-47dof zinc finger protein DOF3.1-like
TrEMBLA0A3Q9EDL74e-45A0A3Q9EDL7_POPTO; DOF zinc finger protein 1
STRINGLus100277971e-144(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61813351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.11e-34DOF zinc finger protein 1