PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10027806

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

G2-like

Protein Properties

Length: 239aa MW: 26908.5 Da PI: 10.2128

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10027806	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99	3.4e-31	11	65	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k rlrWt+eLH+rF eav+qLGG+++AtPk il+ m++ gLt++hvkSHLQkYR+ Lus10027806 11 KDRLRWTQELHDRFEEAVTQLGGPDRATPKGILKSMGISGLTIYHVKSHLQKYRI 65 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.013	8	68	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.4E-29	10	66	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.84E-17	11	65	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-24	11	66	IPR006447	Myb domain, plants
Pfam	PF00249	4.7E-10	13	64	IPR001005	SANT/Myb domain
Pfam	PF14379	1.2E-17	96	141	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MVSRRSDGAG KDRLRWTQEL HDRFEEAVTQ LGGPDRATPK GILKSMGISG LTIYHVKSHL 60 QKYRISKFIP ETPNRGMERR NISEMLPNFS ATSGAQLNEA LQMQLEVERR LSDHLEVQRS 120 LKVKIEAQGR FLERIVEEHK NSNRSSSAAF SKPMMKPLPT MSLPSLESES DSEGDRLNEV 180 QSSSAAQDFR PLKRLRSEND LLPPRYRVSA AQGKNLGWNS INNNNMVSCP PSLVPSFY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-22	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-22	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-22	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-22	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-22	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-22	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-22	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-22	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10027806

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021624319.1	1e-94	myb family transcription factor PHL7-like
Swissprot	Q9SJW0	2e-52	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A2C9VAU8	3e-93	A0A2C9VAU8_MANES; Uncharacterized protein
STRING	Lus10027806	1e-175	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10659	25	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	2e-54	G2-like family protein

Link Out ? help Back to Top
Phytozome	Lus10027806