PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10027897

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

bZIP

Protein Properties

Length: 437aa MW: 48303.8 Da PI: 7.4099

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10027897	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46.9	5.8e-15	324	376	5	57
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++ N++L + e+ ++ + Lus10027897 324 RRQRRMIKNRESAARSRARKQAYTLELEAEVAKLKELNEELERKQAEIMQMQQ 376 79************************************988887777777655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.3E-12	320	384	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.737	322	373	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.1E-11	324	374	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	9.5E-14	324	372	No hit	No description
SuperFamily	SSF57959	8.44E-10	324	373	No hit	No description
CDD	cd14707	2.00E-24	324	378	No hit	No description
PROSITE pattern	PS00036	0	327	342	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence Send to blast
MGSHFNFSSF GNPANSPLVR QQSSVYSLTF DELQNTWGGS IGGKDFGSMN MDELLKNICT 60 AEETSTIGVV EEAGTGNLQR QGSLTLPRTL SQKTVDEVWK DFIKENSVAA AAKDVTQPPD 120 DPMLMPQRQR TLGEMTLEEF LLRAGVVREE NNNNNNKQQF GRPSNVGFFG ESAQLNGGDH 180 SGLALGFQPS NRENIINNNS FLANQGSNLG LNVGGIRPPP HQQLHQQSTL HRSRNQPRHQ 240 QQQQPLLFPK PAHVPFASPV HNKINGGRSS AAGVTVATAS PASQKSPDVL SRSDADTLSV 300 SPVPYVFSSR GRRPNTALEK VVERRQRRMI KNRESAARSR ARKQAYTLEL EAEVAKLKEL 360 NEELERKQAE IMQMQQNQGV HLDARIVYRS EFHCDFAVLG ENEASMGRQA ALLEEDTDRA 420 MVESQDQLDI VSKHRV*

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence Send to blast

MGSHFNFSSF GNPANSPLVR QQSSVYSLTF DELQNTWGGS IGGKDFGSMN MDELLKNICT  60
AEETSTIGVV EEAGTGNLQR QGSLTLPRTL SQKTVDEVWK DFIKENSVAA AAKDVTQPPD  120
DPMLMPQRQR TLGEMTLEEF LLRAGVVREE NNNNNNKQQF GRPSNVGFFG ESAQLNGGDH  180
SGLALGFQPS NRENIINNNS FLANQGSNLG LNVGGIRPPP HQQLHQQSTL HRSRNQPRHQ  240
QQQQPLLFPK PAHVPFASPV HNKINGGRSS AAGVTVATAS PASQKSPDVL SRSDADTLSV  300
SPVPYVFSSR GRRPNTALEK VVERRQRRMI KNRESAARSR ARKQAYTLEL EAEVAKLKEL  360
NEELERKQAE IMQMQQNQGV HLDARIVYRS EFHCDFAVLG ENEASMGRQA ALLEEDTDRA  420
MVESQDQLDI VSKHRV*

Functional Description ? help Back to Top
Source	Description
UniProt	Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:11884679, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16463099}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10027897

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA) and cold. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011000551.1	1e-127	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7
Refseq	XP_011000560.1	1e-127	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7
Refseq	XP_011000568.1	1e-127	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7
Refseq	XP_011000576.1	1e-127	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7
Swissprot	Q9M7Q2	1e-91	AI5L7_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 7
TrEMBL	A0A2P2JRX5	1e-123	A0A2P2JRX5_RHIMU; Uncharacterized protein MANES_10G080700
STRING	Lus10027897	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1962	34	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49720.2	1e-78	abscisic acid responsive element-binding factor 1

Link Out ? help Back to Top
Phytozome	Lus10027897

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions. Plant Mol. Biol., 2018. 97(1-2): p. 149-163 [PMID:29680877] Muñiz García MN,Cortelezzi JI,Fumagalli M,Capiati DA Expression of the Arabidopsis ABF4 gene in potato increases tuber yield, improves tuber quality and enhances salt and drought tolerance. Plant Mol. Biol., 2018. 98(1-2): p. 137-152 [PMID:30143991]