PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10028244
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family TALE
Protein Properties Length: 319aa    MW: 36050.7 Da    PI: 7.2355
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10028244genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.33.1e-092402752055
                  HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
     Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                  +k +yps++e+  LA+ +gL+++q+ +WF N+R ++
  Lus10028244 240 YKWPYPSESEKVALAETTGLDQKQINNWFINQRKRH 275
                  5679*****************************885 PP
2ELK38.13.2e-13195216122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELK++LlrKYsgyL+sLkqE+s
  Lus10028244 195 ELKNHLLRKYSGYLSSLKQELS 216
                  9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012567.7E-27101152IPR005541KNOX2
PfamPF037919.9E-24106150IPR005541KNOX2
SMARTSM011883.5E-7195216IPR005539ELK domain
PfamPF037892.1E-10195216IPR005539ELK domain
PROSITE profilePS5121311.296195215IPR005539ELK domain
PROSITE profilePS5007113.054215278IPR001356Homeobox domain
SuperFamilySSF466895.99E-20216291IPR009057Homeodomain-like
SMARTSM003894.6E-13217282IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-27220281IPR009057Homeodomain-like
CDDcd000865.11E-12227279No hitNo description
PfamPF059207.1E-17235274IPR008422Homeobox KN domain
PROSITE patternPS000270253276IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MFGYCSPLEG ILGSKSRRLP VSNKLTADNP EIYGDIIKCG GCAAGRGLVC TQTQAGSRVQ  60
SGSPLFPPSN TVGAPAEVVA RLAAARQEFE SRQRSSIHGQ MNNNTAKDPE LDQFMEAYYD  120
MLVKYREELT RPIQEAMEFM RRVETQLNLI STVPLRVFNS DDKSEGMGGS SEEEQENSGG  180
ETELPEIDPR AEDRELKNHL LRKYSGYLSS LKQELSKKKK KGKLPKEARQ KLLSWWELHY  240
KWPYPSESEK VALAETTGLD QKQINNWFIN QRKRHWKPSE DMQFMVMDGL HHPAQNPAAA  300
LYMDAHHYMP DGPYRLGP*
Functional Description ? help Back to Top
Source Description
UniProtAppears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10028244
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006472353.11e-138homeotic protein knotted-1
SwissprotQ413301e-133KN1_SOLLC; Homeotic protein knotted-1
TrEMBLA0A2H5P6R61e-137A0A2H5P6R6_CITUN; Uncharacterized protein
TrEMBLA0A2I0JH571e-137A0A2I0JH57_PUNGR; Uncharacterized protein
TrEMBLV4SGX41e-137V4SGX4_9ROSI; Uncharacterized protein
STRINGLus100282440.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45843246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-100KNOTTED-like from Arabidopsis thaliana