PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10028271
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WOX
Protein Properties Length: 240aa    MW: 27731.8 Da    PI: 8.7497
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10028271genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.38.4e-213697157
                 TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 ++ R+++t+eq+++L +lF++  r+ps++++++++++l    +++ ++V++WFqN++a+e++
  Lus10028271 36 KCGRWNPTPEQVKVLTDLFRSgLRTPSTDQIQKISSQLsfygKIESKNVFYWFQNHKARERQ 97
                 568*****************99**************************************97 PP
2Wus_type_Homeobox114.55.1e-373699265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++ RW+PtpeQ+k+L++l++sGlrtP++++iq+i+++L+ yGkie+kNVfyWFQN+kaRerqk+
        Lus10028271 36 KCGRWNPTPEQVKVLTDLFRSGLRTPSTDQIQKISSQLSFYGKIESKNVFYWFQNHKARERQKR 99
                       678***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.0623398IPR001356Homeobox domain
SMARTSM003892.0E-435102IPR001356Homeobox domain
PfamPF000466.0E-183797IPR001356Homeobox domain
SuperFamilySSF466897.27E-1238100IPR009057Homeodomain-like
CDDcd000861.56E-53999No hitNo description
Gene3DG3DSA:1.10.10.602.6E-83997IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MEERMASSGF CIAKARTHLR NKPNNTTADQ YGSGTKCGRW NPTPEQVKVL TDLFRSGLRT  60
PSTDQIQKIS SQLSFYGKIE SKNVFYWFQN HKARERQKRR RVSVDDNDVV FVAPPAPAPT  120
LTTSHGLLRR HDHFSSSARY VSDSYINRRH HQEEEEPAAA ERVMETLQLF PINPFHEPVD  180
HHDQMGGDKF KSSFQANDYH YYNHHHYYYR KDANNNTGFP CGFGSEMDHP PLDLRLSFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197101KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10028271
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021648231.15e-78WUSCHEL-related homeobox 5-like
TrEMBLA0A067LC762e-70A0A067LC76_JATCU; Uncharacterized protein
STRINGLus100282710.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60143452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11260.19e-48WUSCHEL related homeobox 5