PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10028456
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 299aa    MW: 33201.3 Da    PI: 6.637
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10028456genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.3e-092978154
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 r++ +  rEr RRdr+N+ f eL   l +      +K++Ka+iL+ +++ +k+L
  Lus10028456 29 RKVQKADRERLRRDRLNEQFLELGHTLDPE----RPKNDKATILTDTIQILKDL 78
                 5677889******************99886....69***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.2812878IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-132998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1129100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-72978IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-63484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MNQRKAADDS IHEPRQRQEV EAKDPIAARK VQKADRERLR RDRLNEQFLE LGHTLDPERP  60
KNDKATILTD TIQILKDLTS EVDRLKTECA ALSEESRELM QEKNELREEK ASLKSDVENL  120
NIQYQQRLRV MFPWGPVDPS VVMGPAYSYA VPVPVPPGPM PMHHPQMQPF PFFRNQPPNA  180
ATFMPYPTPP NPPNEHPSAQ SAAAASHGSS KPDPKSKSVG SHTESCDDSA DVATELVLKM  240
PGSSSQQEMP GVERKRKLLQ RKEKDVGCVV SSSSLSSSPL TIYDNSFNSV NDVGSSKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13742RLRRDR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10028456
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021274836.11e-118transcription factor bHLH121 isoform X2
RefseqXP_021274839.11e-119transcription factor bHLH121 isoform X4
SwissprotQ9LT233e-70BH121_ARATH; Transcription factor bHLH121
TrEMBLM5WH391e-117M5WH39_PRUPE; Uncharacterized protein
STRINGLus100284560.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22823376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.12e-47bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]