PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10028470
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family LBD
Protein Properties Length: 109aa    MW: 11912.9 Da    PI: 8.9284
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10028470genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.31.9e-314104196
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg++++++++l+q+++e
  Lus10028470   4 SCNGCRVLRKGCSDNCSIRPCLqwiksPDSQAHATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWHLCQAAVE 101
                  6***********************************************************************************************99 PP

       DUF260  94 lal 96 
                  +++
  Lus10028470 102 AVR 104
                  865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.4263108IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-254103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDNCS IRPCLQWIKS PDSQAHATVF LAKFYGRAGL MNLINAGPDH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWHLCQAAV EAVRESTV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10028470
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012077976.11e-70LOB domain-containing protein 40
SwissprotQ9ZW961e-67LBD40_ARATH; LOB domain-containing protein 40
TrEMBLA0A1D1Y8259e-70A0A1D1Y825_9ARAE; LOB domain-containing protein 40 (Fragment)
STRINGLus100284701e-75(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.14e-70LOB domain-containing protein 40