PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10028583

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

Trihelix

Protein Properties

Length: 137aa MW: 15803.4 Da PI: 4.8963

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10028583	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	63.5	4.9e-20	1	49	38	87
trihelix 38 mrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a Lus10028583 1 MKRIGYNRSAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 49 789****************************8.99*********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.0E-13	1	50	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MKRIGYNRSA KRCKEKWENI NKYFKKVKES NKKRPEDSKT CPYFHQLDAL YRERQSNLVP 60 ILVQPEQQWP PQPAAVASQQ PAPPPPHPVH QHRPDAVMED MESEDDNEDD DDEEGDDDHD 120 GGSYELVSNK PTSMNM*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10028583

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107139	1e-34	AK107139.1 Oryza sativa Japonica Group cDNA clone:002-124-D01, full insert sequence.
GenBank	AL606587	1e-34	AL606587.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011L07, complete sequence.
GenBank	AP014960	1e-34	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CP012612	1e-34	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBank	CR855197	1e-34	CR855197.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0115B09, complete sequence.
GenBank	EU956843	1e-34	EU956843.1 Zea mays clone 1575747 mRNA sequence.
GenBank	KM666076	1e-34	KM666076.1 Ananas bracteatus clone 51301b microsatellite sequence.
GenBank	X68261	1e-34	X68261.1 O.sativa gt-2 gene.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002302180.2	2e-43	trihelix transcription factor GT-2
Swissprot	Q39117	6e-30	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	A0A2K2BEP7	5e-42	A0A2K2BEP7_POPTR; Uncharacterized protein
STRING	Lus10028583	2e-97	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF373	34	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	3e-31	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Lus10028583