PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10028611
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Dof
Protein Properties Length: 232aa    MW: 25177.1 Da    PI: 4.6389
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10028611genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof117.84.1e-372886462
       zf-Dof  4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                 +a +cprC s+ntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+r++k+++
  Lus10028611 28 TAPNCPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTRGGSLRNVPVGGGCRRRKSRR 86
                 5679**************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-241279IPR003851Zinc finger, Dof-type
PfamPF027011.8E-312984IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.3513084IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103268IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MFHSVCSSGE VRPETLASLQ GSRPHLETAP NCPRCASSNT KFCYYNNYSL SQPRYFCKGC  60
RRYWTRGGSL RNVPVGGGCR RRKSRRSSRT AAAAPPLPPV EAAATDLRRA DIDMADVFAK  120
FLNPESVSNS SSSMASTPES GGTLFLATAG EEAEYELMAD LFREEGFPEE QSLEMINVTL  180
LSEEMAELEA ALWSTTTVDT DHQVTMPSPL GFDSGDFGVS IGNSDCFDLP L*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10028611
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023759589.12e-45dof zinc finger protein DOF1.2
SwissprotP683491e-37DOF12_ARATH; Dof zinc finger protein DOF1.2
TrEMBLA0A2J6MGP14e-44A0A2J6MGP1_LACSA; Uncharacterized protein
STRINGLus100286111e-171(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18173394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.11e-33Dof family protein