PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10028679
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 377aa    MW: 40479.7 Da    PI: 10.1132
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10028679genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.8e-20148197255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  Lus10028679 148 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 197
                  7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.9E-38148211IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-33148206IPR001471AP2/ERF domain
PROSITE profilePS5103225.752148205IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-22148206IPR016177DNA-binding domain
PfamPF008473.2E-14148197IPR001471AP2/ERF domain
PRINTSPR003679.5E-12149160IPR001471AP2/ERF domain
CDDcd000185.99E-16156207No hitNo description
PRINTSPR003679.5E-12171187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MMGNSSSNIV SNQTTPRSAR EMSAMVSALT HVVSGTGQLG YGGAPSTASS GNSSGLWTAV  60
GQKRGREDGN RGEGSSNQLV DREVVFRGGF DRDFVVHGGD SSSSGATVKV EDLTIPAISS  120
AVAVVATVSN AEVANSAEDS GGVERRRRYR GVRQRPWGKW AAEIRDPHKA ARVWLGTFDT  180
AEAAARAYDE AALRFRGSRA KLNFPENVRL LPHQIHNVTS AASSSSSSST VRHIVPRIPP  240
PQQVPPSPSF LPSVHHQAEF MRDYWQYSQL LQSSGEFQAR QQPPTLLEQL LYTPQHAPPT  300
LSLPLPSTTS PPSIRASPST TTSFPLLFAG QQQPGYFRPN QNPDPTQNLN RNPTAGSDFP  360
VPPWSHSSTN YPPSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-23149208666ATERF1
3gcc_A3e-23149208666ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143148ERRRRY
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10028679
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024456284.12e-73ethylene-responsive transcription factor ABR1
TrEMBLA0A2K2AJ344e-72A0A2K2AJ34_POPTR; Uncharacterized protein
TrEMBLA0A3N7F6531e-72A0A3N7F653_POPTR; Uncharacterized protein
STRINGLus100286790.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49193253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.19e-16ERF family protein