PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10028794
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family SRS
Protein Properties Length: 201aa    MW: 22121.8 Da    PI: 8.7332
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10028794genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702121.79.2e-38221685154
       DUF702   5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelet 102
                  + +C+dCGnqak++C + RCR CC+ r ++C+thv stWvp++ rr +q+++  +s+++        s ++++         +    ++++ ++ le 
  Lus10028794  22 GRRCEDCGNQAKRECRYWRCRRCCRRRKLECQTHVSSTWVPTSLRRLQQAAARGSSTTH-------PSTSHQQ--------HHVLLHHHHHIPSDLES 104
                  679******************************************98644433322211.......1111111........11222233455667889 PP

       DUF702 103 sslPeevsseavfrcvrvssv.........ddge....eelaYqtavsigGhvfkGiLydqGlee 154
                  +++P ev s+a f+c +v+s+         dd +    +e+aY+t+vsigGh+f+GiLydqG+++
  Lus10028794 105 ENFPGEVTSMATFHCCKVRSLrldggrnhgDD-DrlvfDEYAYRTSVSIGGHLFNGILYDQGPQS 168
                  99****************99755444433322.1344479**********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051424.9E-3622167IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.0E-182564IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016246.0E-15107166IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MMNGGGGETS AGSLRGGGAV AGRRCEDCGN QAKRECRYWR CRRCCRRRKL ECQTHVSSTW  60
VPTSLRRLQQ AAARGSSTTH PSTSHQQHHV LLHHHHHIPS DLESENFPGE VTSMATFHCC  120
KVRSLRLDGG RNHGDDDRLV FDEYAYRTSV SIGGHLFNGI LYDQGPQSER RQSSATAGVV  180
LAPLPPLVPC TFPLPTLHTQ *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13249KRECRYWRCRRCCRRRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10028794
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100287941e-147(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.12e-25Lateral root primordium (LRP) protein-related