PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10028845
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NF-YB
Protein Properties Length: 254aa    MW: 27971.1 Da    PI: 6.7932
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10028845genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB169.34.6e-5327122297
        NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                  reqd+++Pianv+rim+++lP +akis+daket+qecvse+isfvt+ea+++cqre+rkt+++dd+lwa+++lGf++yvepl++yl++yre+eg++
  Lus10028845  27 REQDQYMPIANVIRIMRRILPPHAKISDDAKETIQECVSEYISFVTGEANERCQREQRKTVTADDVLWAMGKLGFDNYVEPLSLYLARYRETEGDR 122
                  89********************************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.3E-4825126IPR009072Histone-fold
SuperFamilySSF471131.24E-3529124IPR009072Histone-fold
PfamPF008086.0E-253296IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006155.0E-166078No hitNo description
PROSITE patternPS0068506379IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006155.0E-167997No hitNo description
PRINTSPR006155.0E-1698116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MNPPPRQQQN PPPPGGGGGR GRPLQLREQD QYMPIANVIR IMRRILPPHA KISDDAKETI  60
QECVSEYISF VTGEANERCQ REQRKTVTAD DVLWAMGKLG FDNYVEPLSL YLARYRETEG  120
DRAAYRDPNL LLKRSAAAAH HDHHRQDFGP SMIMPPAAPP LAPNFQMQQQ CHNTNFQMQQ  180
QGPNGNFQMQ QQGDHNNNIN QGMYDAAAAA GGYYREPLLL GSGSGQGSHS GAGGGEDGGA  240
GMPNFDHLYS QFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A9e-5821117197NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10028845
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ9022521e-128HQ902252.1 Linum usitatissimum cultivar CDC Bethune putative beta-galactosidase (Bgal1) and putative glycosyl transferase family 1 protein genes, complete cds; putative SUMO-activating enzyme 1A transcript gene, complete cds, alternatively spliced; putative transcription factor H2A superfamily proteins, putative protease, and hypothetical protein genes, complete cds; and putative ATP-binding cassette transporter gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021669717.11e-65nuclear transcription factor Y subunit B-9-like
TrEMBLF6LC751e-114F6LC75_LINUS; Putative transcription factor H2A superfamily protein
STRINGLus100288450.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27283279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.24e-58nuclear factor Y, subunit B6