PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10028978
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 220aa    MW: 24152.2 Da    PI: 8.6443
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10028978genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.8e-123783354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 r+h+++E+rRRdriN  + +Lr+l+Pk+      K++Ka+ L  ++e +++L
  Lus10028978 37 RSHSQAEKRRRDRINAQLTTLRKLIPKS-----DKMDKAALLGSVIEQVRDL 83
                 78*************************8.....7***********9988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.8623483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-133596IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.47E-93784No hitNo description
PfamPF000105.1E-103783IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-143786IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-104089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550216.64E-5128188No hitNo description
Gene3DG3DSA:3.30.70.2605.1E-5128169No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MDFTDNGDES AFPFSWSNCS FFPVHESAED KAASSSRSHS QAEKRRRDRI NAQLTTLRKL  60
IPKSDKMDKA ALLGSVIEQV RDLKSKANEV EKQVTVPSEI DEISVDCCDV GGGGGGGDDN  120
NVFFVRASLT CEDRPELLSE LIRMVKGQRL EIVHADITSV GGRVKSVFVF YNNGGGDKRS  180
VVSGIKQSLN VVLSRITSAT VPSSYRIRSK RQRFFMPSN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10028978
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311240.14e-83transcription factor bHLH51 isoform X1
RefseqXP_024463294.14e-83transcription factor bHLH51 isoform X1
RefseqXP_024463295.14e-83transcription factor bHLH51 isoform X1
TrEMBLB9HHS98e-82B9HHS9_POPTR; Uncharacterized protein
STRINGLus100289781e-160(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57963351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.14e-46bHLH family protein