PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10028997

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

C2H2

Protein Properties

Length: 189aa MW: 21568.6 Da PI: 7.8045

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10028997	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00018	63	85	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Lus10028997 63 FSCNYCRRKFYSSQALGGHQNAH 85 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.39E-6	60	90	No hit	No description
PROSITE profile	PS50157	11.136	63	90	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	65	85	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MHQPDSRSDS EENEYERTNQ VASLDLSLQL LHSHNNFNES DHHHDEQSNY GESAPRTVPP 60 RVFSCNYCRR KFYSSQALGG HQNAHKRERI IAKRAVRLRV YSRYNMNLGI QAHSASHIFP 120 LQRPPLPPLD HGFGARFERN FYQEEEEVGS YWPGSFRQFA DGRPNYTTTN SVATSSSSSS 180 GLDLTLKL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10028997

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021595426.1	3e-38	zinc finger protein 4-like
Refseq	XP_021595427.1	3e-38	zinc finger protein 4-like
Refseq	XP_021595428.1	3e-38	zinc finger protein 4-like
Refseq	XP_021595429.1	3e-38	zinc finger protein 4-like
TrEMBL	A0A251J6W3	7e-37	A0A251J6W3_MANES; Uncharacterized protein
TrEMBL	A0A2P2KAK7	5e-37	A0A2P2KAK7_RHIMU; Zinc finger protein 4-like
STRING	Lus10028997	1e-139	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9619	23	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24625.1	6e-27	zinc finger protein 7

Link Out ? help Back to Top
Phytozome	Lus10028997