PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10029022
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 257aa    MW: 27679.2 Da    PI: 8.2971
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10029022genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.84.6e-28152212259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dg++WrKYGqKe+ gs+fpr+Y+rCt++   +C++kk+v+r ++dp++ e+tY+g+H+++
  Lus10029022 152 EDGFTWRKYGQKEILGSRFPRGYFRCTHQklyNCRAKKQVQRLDHDPDTYEVTYRGRHTCH 212
                  7****************************999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.3E-27147213IPR003657WRKY domain
SuperFamilySSF1182904.18E-25148213IPR003657WRKY domain
SMARTSM007741.1E-36151213IPR003657WRKY domain
PROSITE profilePS5081120.392152214IPR003657WRKY domain
PfamPF031062.1E-25152212IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MDQTLALLLH ACNLARHLES NLLPHINNSE ALSKSCDEII AVFLACKERL SLSGNPQQGG  60
LSGQPPWLMK CSSSNPSAMT TMEMFQAADH DQVANTTASM GMTTMEVAPG APSSSSGGVR  120
FGGGGAAGKN EADRKTIRVP VPRVGNTEIP PEDGFTWRKY GQKEILGSRF PRGYFRCTHQ  180
KLYNCRAKKQ VQRLDHDPDT YEVTYRGRHT CHMSTTAPSV GPAPEEPHTG PSVTSALQQV  240
ITAAAQQQQS KASWAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-20152211968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10029022
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010147.11e-64PREDICTED: WRKY transcription factor 55-like
RefseqXP_012091129.16e-65WRKY transcription factor 55
TrEMBLS5CH761e-63S5CH76_JATCU; WRKY transcription factor 55
STRINGLus100290220.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86293142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.12e-45WRKY DNA-binding protein 55