PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10029061

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

LBD

Protein Properties

Length: 213aa MW: 22976.8 Da PI: 6.5926

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10029061	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	118.3	4.6e-37	29	129	1	100
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +CaaCk+lrr+Ca++ C+++pyf +p+kfa+vhk+FGasnv+k+l+++ e++r da++slvyeA +r+rdPv+G++g i+ lq+q+++l++el +l Lus10029061 29 PCAACKLLRRRCAAQeCPFSPYFSPLEPHKFAYVHKVFGASNVSKMLTEVGESQRWDAANSLVYEASVRLRDPVHGCMGAISLLQHQIHSLESELTTL 126 7*********8655*****************************************************************************999 PP DUF260 98 kee 100 ++e Lus10029061 127 RAE 129 876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.744	28	130	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.0E-37	29	127	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MENSDDVERV MMLSSNSSQA SGGLNTITPC AACKLLRRRC AAQECPFSPY FSPLEPHKFA 60 YVHKVFGASN VSKMLTEVGE SQRWDAANSL VYEASVRLRD PVHGCMGAIS LLQHQIHSLE 120 SELTTLRAEI LHHRYNAAAA TPPSTMDIVT TTTTSPMIIN SPPPVDFSHD VRGQGAVLLP 180 PVTLSTDSSS SSSPSNRYGG ISNNDHNIPF YG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-39	29	150	11	130	LOB family transfactor Ramosa2.1
5ly0_B	1e-39	29	150	11	130	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10029061

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004970407.1	7e-67	LOB domain-containing protein 15
Swissprot	Q9AT61	2e-63	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A368RCJ5	2e-65	A0A368RCJ5_SETIT; Uncharacterized protein
STRING	Lus10029061	1e-157	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	3e-53	LOB domain-containing protein 13

Link Out ? help Back to Top
Phytozome	Lus10029061

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]