PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10029135

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

YABBY

Protein Properties

Length: 222aa MW: 24923.9 Da PI: 5.0004

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10029135	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	211.9	2.2e-65	14	201	4	169
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas.....qllaaeshldeslkee.....lleelkveeenlksnvekees 91 s eq+CyvqC+fC+til+vsvP +s+++vvtvrCGhCtsllsvn+ kas l a+ +h d+++ + l+e + e e++ s + +e++ Lus10029135 14 ASLVEQICYVQCGFCTTILLVSVPCSSMSMVVTVRCGHCTSLLSVNMIKASfvpfhLLSASLDHRDHDIVTPpprhqSLNEWQEEVEEVASPEAEEDH 111 56789****************************************999878884556778999998876667777344444444444444444443 PP YABBY 92 astsvs.sekl..........senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 ++ +++ + +l +++ed ++++ + +++PPekrqr+Psayn+fikeei+r+k++nP ++h+eafs+aaknWahfP++h+ Lus10029135 112 EEGDQKgTLSLmnsgtsddnnEDHEDSNTTNLNRiINKPPEKRQRAPSAYNCFIKEEIKRLKSENPTMAHKEAFSMAAKNWAHFPPVHYR 201 3332220222246677764333333333444444589*************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	6.0E-62	17	201	IPR006780	YABBY protein
SuperFamily	SSF47095	7.07E-9	143	196	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.0E-5	149	196	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MPLSHMFDLS SSAASLVEQI CYVQCGFCTT ILLVSVPCSS MSMVVTVRCG HCTSLLSVNM 60 IKASFVPFHL LSASLDHRDH DIVTPPPRHQ SLNEWQEEVE EVASPEAEED HEEGDQKGTL 120 SLMNSGTSDD NNEDHEDSNT TNLNRIINKP PEKRQRAPSA YNCFIKEEIK RLKSENPTMA 180 HKEAFSMAAK NWAHFPPVHY RVEEDGDGDQ IRLNEPRQIF K*

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10029135

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021633751.1	3e-72	axial regulator YABBY 4 isoform X4
Refseq	XP_021633753.1	3e-72	axial regulator YABBY 4 isoform X6
Swissprot	Q9LDT3	1e-63	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A2P5FMG1	5e-72	A0A2P5FMG1_TREOI; YABBY protein
STRING	Lus10029135	1e-166	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6144	28	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	7e-48	YABBY family protein

Link Out ? help Back to Top
Phytozome	Lus10029135

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]