PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10029269
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HSF
Protein Properties Length: 267aa    MW: 30583.8 Da    PI: 6.4189
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10029269genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.21.5e-34141052102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye+++d++ ++++sws++++sf+v+ + +f++++Lp++Fkh+nf+SF+RQLn+YgF+k + e+         weF+++ F +g+ +l+++i+
   Lus10029269  14 FLTKTYEMVDDPSSDSIVSWSASNKSFIVWSPPDFSRELLPRFFKHNNFSSFIRQLNTYGFRKADPEQ---------WEFANEDFVRGQPHLMKNIH 101
                   9********************999***************************************99988.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   Lus10029269 102 RRKP 105
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.99E-359103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.6E-6210103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.5E-3811103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.3E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.0E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MDETQGSSSS LPPFLTKTYE MVDDPSSDSI VSWSASNKSF IVWSPPDFSR ELLPRFFKHN  60
NFSSFIRQLN TYGFRKADPE QWEFANEDFV RGQPHLMKNI HRRKPVHSHS MQNIQVQGSA  120
NPLTDAERQS LKHDIARLKH DKEVLVLELQ RKEQERRAFE LQMQALRGKF EELEMRQKTI  180
ASCLTQALKK PGLSLDLMPQ LEGHERKRRL PRISCYDDPM LEDSTQMEMS ACLAGENTDP  240
SCCLAVEMDE CPAAQIALHC LLCNSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-25910324129Heat shock factor protein 1
5d5v_B7e-25910324129Heat shock factor protein 1
5d5v_D7e-25910324129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209ERKRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10029269
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021676457.11e-123heat stress transcription factor A-4a-like
RefseqXP_021676458.11e-123heat stress transcription factor A-4a-like
RefseqXP_021676459.11e-123heat stress transcription factor A-4a-like
RefseqXP_021676460.11e-123heat stress transcription factor A-4a-like
SwissprotO494038e-93HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A067JBG61e-121A0A067JBG6_JATCU; Uncharacterized protein
STRINGLus100292690.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35683361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.13e-95heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]