PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10029318
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 202aa    MW: 22379 Da    PI: 8.6538
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10029318genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.5e-19105154355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +kGVr+++ +g+++AeIrdp+ ng  +r++lg++ ++e+Aa a+++a+ +++g
  Lus10029318 105 FKGVRRRP-WGKYAAEIRDPKRNG--ARIWLGTYESPEDAALAYDRAAFEMWG 154
                  8*******.**********98776..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.4E-30104163IPR001471AP2/ERF domain
CDDcd000181.77E-29104164No hitNo description
SMARTSM003804.8E-36104168IPR001471AP2/ERF domain
PROSITE profilePS5103222.985104162IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-23104163IPR016177DNA-binding domain
PfamPF008471.6E-13105154IPR001471AP2/ERF domain
PRINTSPR003671.0E-8105116IPR001471AP2/ERF domain
PRINTSPR003671.0E-8128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MWGYSEEIDI MDSLFMDDYS SDPSFLESIH DFLISGDFEN DVVPSSSAPS PSSTTTSTSS  60
DNPPTNVSRQ ISAVQSPTTL SCQMISAVQP PTEKKKRSGA STWQFKGVRR RPWGKYAAEI  120
RDPKRNGARI WLGTYESPED AALAYDRAAF EMWGAKAKLN FPHLVGSTKY EPVRVTNGKK  180
RAADQTDNCS PKPKRILKFQ T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-27104167568ATERF1
3gcc_A2e-27104167568ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10029318
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021611585.13e-49ethylene-responsive transcription factor 13-like
TrEMBLA0A2C9VTM37e-48A0A2C9VTM3_MANES; Uncharacterized protein
STRINGLus100293181e-148(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-42ethylene-responsive element binding factor 13