PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10029319

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

ERF

Protein Properties

Length: 168aa MW: 18403.5 Da PI: 9.9309

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10029319	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.7	2.8e-18	66	116	3	56
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +kGVr+++ +g+++AeIrdp+ ng +r++lg++ +++Aa a+++a+ +++g+ Lus10029319 66 FKGVRRRP-WGKYAAEIRDPKRNG--ARIWLGTYECPKDAALAYDRAAFEMRGA 116 8*****.******98776..************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	22.155	65	123	IPR001471	AP2/ERF domain
SMART	SM00380	2.4E-33	65	129	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	8.5E-22	65	124	IPR016177	DNA-binding domain
CDD	cd00018	2.48E-25	65	125	No hit	No description
Gene3D	G3DSA:3.30.730.10	6.3E-30	65	124	IPR001471	AP2/ERF domain
Pfam	PF00847	8.7E-13	66	115	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.0E-12	66	77	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.0E-12	105	125	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MDDSSSSSSS DPATFLDSIH HLLLSKHLDD VVLPTTTPHS SSSSSTIISA VEEERSGGTK 60 TSTWQFKGVR RRPWGKYAAE IRDPKRNGAR IWLGTYECPK DAALAYDRAA FEMRGAKAKL 120 NFPHLIGSAE YQPVRVTAGK KRAGGDDRTG QENDPKLKRV RPADFQT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	1e-28	65	130	5	70	ATERF1
3gcc_A	1e-28	65	130	5	70	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269\|PubMed:11950980}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10029319

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269\|PubMed:11950980, ECO:0000269\|PubMed:12068110}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012083861.1	5e-45	ethylene-responsive transcription factor 2
Refseq	XP_021611585.1	4e-45	ethylene-responsive transcription factor 13-like
Swissprot	Q8L9K1	1e-41	ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBL	A0A2C9VTH3	4e-45	A0A2C9VTH3_MANES; Uncharacterized protein
STRING	Lus10029319	1e-121	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF512	33	157

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44840.1	7e-42	ethylene-responsive element binding factor 13

Link Out ? help Back to Top
Phytozome	Lus10029319

Publications ? help Back to Top
Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum. Plant Physiol., 2007. 145(4): p. 1588-99 [PMID:17965181] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]