PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10029405
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family TALE
Protein Properties Length: 669aa    MW: 72658.2 Da    PI: 7.1993
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10029405genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.31.4e-093503871954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Lus10029405 350 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 387
                  664459******************************88 PP
2BELL119.51.5e-38213284172
         BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  erqe+q+kkak +s+l+eV++rY+qy++q+q+vi++Fe++ag+g+ak Yt+lAlk+iS++FrcL+dai++qi
  Lus10029405 213 ERQEIQMKKAKVISMLDEVEQRYRQYHHQMQAVIGAFEQAAGIGAAKTYTALALKTISKQFRCLRDAITGQI 284
                  79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.7E-60127282IPR006563POX domain
PfamPF075261.2E-48134281IPR006563POX domain
PROSITE profilePS5007112.163328391IPR001356Homeobox domain
SMARTSM003896.4E-9331395IPR001356Homeobox domain
CDDcd000863.61E-12331392No hitNo description
SuperFamilySSF466894.28E-17332398IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.9E-29334397IPR009057Homeodomain-like
PfamPF059202.7E-18348387IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MNPSYVQYSD TPPPPQQPPP PQFVGIPLDH HHQQHHHELS SPPAIHHRQL HHYNLYSSAI  60
DPTEAAARET PRPHQQGLSL TLSAAAAAAG GGYGSGMSED HCVRVSAGSG SSSVTVANNG  120
GGGSGVHNGM QLGVLVSSKY LKAAQELLDE VVNVNGNGNG NGTHGAVSKN GESGSRKAIN  180
DNNNSAVGGE SSVAGDGKVD EGVQPAPELS TVERQEIQMK KAKVISMLDE VEQRYRQYHH  240
QMQAVIGAFE QAAGIGAAKT YTALALKTIS KQFRCLRDAI TGQIKAANKS LGEEESPGGG  300
KIEGSRLKFV DHHLRQQRAL QQLGMIQHNA WRPQRGLPER SVSILRAWLF EHFLHPYPKD  360
SDKHMLAKQT GLTRSQVSNW FINARVRLWK PMVEEMYTEE MKDQEQTNNN GVSGDKITSN  420
KSDQNEESSS QSVPFRHDKN LGSSSFRSSV DNNNNNNSPN QNVPSGISIS TFPPPIGSLR  480
NHSAFSITAS SELEGITQGS PKKPRNNNHI DMLQLPSPTS VQSNNNNNNN DHHDLIKFVD  540
ERQSRDAGYS FMGVHNNFMH GAFGQYPIAE IGRFDPDQFT QRFSSGNGVN LSLGLPHCDN  600
LNLSAATTHQ SFLPNQSIQL GIRRNDQMGE ANEFGAIASS AAPTTYESIN NIQNRKGFAA  660
PLLPDFVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-16337395563Homeobox protein Meis2
3k2a_B3e-16337395563Homeobox protein Meis2
4xrs_A3e-16337394158Homeobox protein Meis1
4xrs_B3e-16337394158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10029405
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021650408.10.0BEL1-like homeodomain protein 1
RefseqXP_021650409.10.0BEL1-like homeodomain protein 1
RefseqXP_021650410.10.0BEL1-like homeodomain protein 1
RefseqXP_021650411.10.0BEL1-like homeodomain protein 1
RefseqXP_021650412.10.0BEL1-like homeodomain protein 1
RefseqXP_021650413.10.0BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-159BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A2N9GIG50.0A0A2N9GIG5_FAGSY; Uncharacterized protein
STRINGLus100294050.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16273492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-121BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]